RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 VSTM4Q8IW00 320 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 FGFBP2Q9BYJ0 223 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 BHMT2Q9H2M3 363 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 SEMA6BQ9H3T3 888 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 R3HDMLQ9H3Y0 253 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 PCDHA2Q9Y5H9 948 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 WDR81Q562E7 1941 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 ASTN1O14525 1302 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 ZNF500O60304 480 aaPredicted RBP15.36■□□□□ 0.05
PTPRF-202ENST00000372405 RGS20O76081 388 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 EYA4O95677 639 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 CCNE1P24864 410 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 EPHA7Q15375 998 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 ANKRD40Q6AI12 368 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 GPAT2Q6NUI2 795 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 TPH2Q8IWU9 490 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 MB21D1Q8N884 522 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 PIGOQ8TEQ8 1089 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 P2RX5Q93086 422 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 GTPBP4Q9BZE4 634 aaKnown RBP15.36■□□□□ 0.05
PTPRF-202ENST00000372405 PANK4Q9NVE7 773 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 IMPACTQ9P2X3 320 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 ADD3Q9UEY8 706 aaKnown RBP15.36■□□□□ 0.05
PTPRF-202ENST00000372405 TEX33O43247 280 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 CLCN1P35523 988 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 HERVK_113P62684 666 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 IRX3P78415 501 aaPredicted RBP15.35■□□□□ 0.05
PTPRF-202ENST00000372405 GIT2Q14161 759 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 TPD52L1Q16890 204 aaPredicted RBP15.35■□□□□ 0.05
PTPRF-202ENST00000372405 RIOX2Q8IUF8 465 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 LRRC8AQ8IWT6 810 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 CHST13Q8NET6 341 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 NSUN6Q8TEA1 469 aaKnown RBP15.35■□□□□ 0.05
PTPRF-202ENST00000372405 RUSC1Q9BVN2 902 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 SPATC1LQ9H0A9 340 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 ZNF408Q9H9D4 720 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 TXNRD2Q9NNW7 524 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 LIMA1Q9UHB6 759 aaKnown RBP15.35■□□□□ 0.05
PTPRF-202ENST00000372405 LOXHD1Q8IVV2 1947 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 TESPA1A2RU30 521 aaPredicted RBP15.35■□□□□ 0.05
PTPRF-202ENST00000372405 LRRC10BA6NIK2 292 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 CCND2P30279 289 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 PSMD2Q13200 908 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 KRT31Q15323 416 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 LRRC41Q15345 812 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 TCP11X2Q5H9J9 407 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 CENPPQ6IPU0 288 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 ARMCX5Q6P1M9 558 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 XRRA1Q6P2D8 792 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 C17orf53Q8N3J3 647 aaPredicted RBP15.35■□□□□ 0.05
PTPRF-202ENST00000372405 GUF1Q8N442 669 aaKnown RBP15.35■□□□□ 0.05
PTPRF-202ENST00000372405 INPP4AQ96PE3 977 aaPredicted RBP15.35■□□□□ 0.05
PTPRF-202ENST00000372405 REEP2Q9BRK0 252 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 BCAS3Q9H6U6 928 aa15.35■□□□□ 0.05
PTPRF-202ENST00000372405 BMP2KQ9NSY1 1161 aaPredicted RBP15.35■□□□□ 0.05
PTPRF-202ENST00000372405 KCNJ18B7U540 433 aa15.34■□□□□ 0.05
PTPRF-202ENST00000372405 CNTN2Q02246 1040 aa15.34■□□□□ 0.05
PTPRF-202ENST00000372405 FSTL1Q12841 308 aa15.34■□□□□ 0.05
PTPRF-202ENST00000372405 KCNJ12Q14500 433 aa15.34■□□□□ 0.05
PTPRF-202ENST00000372405 FAM26FQ5R3K3 315 aa15.34■□□□□ 0.05
PTPRF-202ENST00000372405 KCTD17Q8N5Z5 321 aa15.34■□□□□ 0.05
PTPRF-202ENST00000372405 BANK1Q8NDB2 785 aa15.34■□□□□ 0.05
PTPRF-202ENST00000372405 EEF2KMTQ96G04 330 aa15.34■□□□□ 0.05
PTPRF-202ENST00000372405 TRIM47Q96LD4 638 aa15.34■□□□□ 0.05
PTPRF-202ENST00000372405 LXNQ9BS40 222 aa15.34■□□□□ 0.05
PTPRF-202ENST00000372405 SRRTQ9BXP5 876 aaKnown RBP15.34■□□□□ 0.05
PTPRF-202ENST00000372405 MAF1Q9H063 256 aa15.34■□□□□ 0.05
PTPRF-202ENST00000372405 RRAGCQ9HB90 399 aa15.34■□□□□ 0.05
PTPRF-202ENST00000372405 TBC1D7Q9P0N9 293 aa15.34■□□□□ 0.05
PTPRF-202ENST00000372405 CCNE2O96020 404 aa15.33■□□□□ 0.05
PTPRF-202ENST00000372405 MUTP22033 750 aa15.33■□□□□ 0.05
PTPRF-202ENST00000372405 PPP1R2P41236 205 aa15.33■□□□□ 0.05
PTPRF-202ENST00000372405 RINT1Q6NUQ1 792 aa15.33■□□□□ 0.05
PTPRF-202ENST00000372405 MIER3Q7Z3K6 550 aa15.33■□□□□ 0.05
PTPRF-202ENST00000372405 CCDC65Q8IXS2 484 aa15.33■□□□□ 0.05
PTPRF-202ENST00000372405 KIAA1524Q8TCG1 905 aa15.33■□□□□ 0.05
PTPRF-202ENST00000372405 PAGR1Q9BTK6 254 aa15.33■□□□□ 0.05
PTPRF-202ENST00000372405 MOV10L1Q9BXT6 1211 aaKnown RBP15.33■□□□□ 0.05
PTPRF-202ENST00000372405 TBC1D22BQ9NU19 505 aa15.33■□□□□ 0.05
PTPRF-202ENST00000372405 RBPJLQ9UBG7 517 aa15.33■□□□□ 0.05
PTPRF-202ENST00000372405 LRRC37A2A6NM11 1700 aa15.33■□□□□ 0.04
PTPRF-202ENST00000372405 RSPH10B2B2RC85 870 aa15.33■□□□□ 0.04
PTPRF-202ENST00000372405 RSPH10BP0C881 870 aa15.33■□□□□ 0.04
PTPRF-202ENST00000372405 PBX1P40424 430 aa15.33■□□□□ 0.04
PTPRF-202ENST00000372405 CCZ1BP86790 482 aa15.33■□□□□ 0.04
PTPRF-202ENST00000372405 CCZ1P86791 482 aaPredicted RBP15.33■□□□□ 0.04
PTPRF-202ENST00000372405 TBX2Q13207 712 aaPredicted RBP15.33■□□□□ 0.04
PTPRF-202ENST00000372405 FASTKD5Q7L8L6 764 aaKnown RBP15.33■□□□□ 0.04
PTPRF-202ENST00000372405 GPRASP2Q96D09 838 aa15.33■□□□□ 0.04
PTPRF-202ENST00000372405 SLC10A4Q96EP9 437 aa15.33■□□□□ 0.04
PTPRF-202ENST00000372405 THAP9Q9H5L6 903 aa15.33■□□□□ 0.04
PTPRF-202ENST00000372405 POLD4Q9HCU8 107 aa15.33■□□□□ 0.04
PTPRF-202ENST00000372405 BICDL2A1A5D9 508 aa15.32■□□□□ 0.04
PTPRF-202ENST00000372405 NKRFO15226 690 aaKnown RBP eCLIP15.32■□□□□ 0.042e-6■■□□□ 12.9
PTPRF-202ENST00000372405 KRT18P05783 430 aaKnown RBP15.32■□□□□ 0.04
PTPRF-202ENST00000372405 GSDMDP57764 484 aa15.32■□□□□ 0.04
PTPRF-202ENST00000372405 Q3C1V9 767 aa15.32■□□□□ 0.04
PTPRF-202ENST00000372405 HERC4Q5GLZ8 1057 aaPredicted RBP15.32■□□□□ 0.04
PTPRF-202ENST00000372405 C1orf186Q6ZWK4 172 aa15.32■□□□□ 0.04
PTPRF-202ENST00000372405 ANKRD35Q8N283 1001 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms