RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 R3HDM1Q15032 1099 aaKnown RBP11.94□□□□□ -0.5
MSH6-201ENST00000234420 NBPF9Q3BBW0 867 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 C1orf146Q5VVC0 180 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 PDXDC1Q6P996 788 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 C1orf131Q8NDD1 294 aaKnown RBP11.94□□□□□ -0.5
MSH6-201ENST00000234420 ICA1LQ8NDH6 482 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 URGCPQ8TCY9 931 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 ZNF148Q9UQR1 794 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 WDR47O94967 919 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 HDAC1Q13547 482 aaPredicted RBP11.94□□□□□ -0.5
MSH6-201ENST00000234420 BTNL9Q6UXG8 535 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 C11orf96Q7Z7L8 435 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 PBXIP1Q96AQ6 731 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 TTC1Q99614 292 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 PARD6BQ9BYG5 372 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 PDE8AO60658 829 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 E2F6O75461 281 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 SSTR3P32745 418 aaPredicted RBP11.94□□□□□ -0.5
MSH6-201ENST00000234420 MXD4Q14582 209 aaPredicted RBP11.94□□□□□ -0.5
MSH6-201ENST00000234420 CDC23Q9UJX2 597 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 CFAP69A5D8W1 941 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 SPTLC1O15269 473 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 CAPN1P07384 714 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 KRT7P08729 469 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 MLH1P40692 756 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 ZNF157P51786 506 aaPredicted RBP11.94□□□□□ -0.5
MSH6-201ENST00000234420 ABCB5Q2M3G0 1257 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 FSCBQ5H9T9 825 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 CDC37L1Q7L3B6 337 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 ZFYVE19Q96K21 471 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 MFSD1Q9H3U5 465 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 PASKQ96RG2 1323 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 TFAP4Q01664 338 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 KRT17Q04695 432 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 ARMCX5Q6P1M9 558 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 BHMTQ93088 406 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 XAGE2Q96GT9 111 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.94□□□□□ -0.5
MSH6-201ENST00000234420 TBC1D23Q9NUY8 699 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 NOS1P29475 1434 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 CCDC141Q6ZP82 1450 aa11.94□□□□□ -0.5
MSH6-201ENST00000234420 A0A1B0GW55 424 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 TRIM16O95361 564 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 DUX4L2P0CJ85 424 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 DUX4L3P0CJ86 424 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 DUX4L4P0CJ87 422 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 DUX4L5P0CJ88 424 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 DUX4L6P0CJ89 424 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 DUX4L7P0CJ90 424 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 WASHC5Q12768 1159 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 PDCLQ13371 301 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 KRT24Q2M2I5 525 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 DUX4Q9UBX2 424 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 CYTH1Q15438 398 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 FOXR1Q6PIV2 292 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 FRA10AC1Q70Z53 315 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 HEATR4Q86WZ0 1026 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 ANKRD13CQ8N6S4 541 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 SYT2Q8N9I0 419 aaPredicted RBP11.93□□□□□ -0.5
MSH6-201ENST00000234420 NRBP1Q9UHY1 535 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.93□□□□□ -0.5
MSH6-201ENST00000234420 ERICH3Q5RHP9 1530 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 FGD6Q6ZV73 1430 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 SP100P23497 879 aaPredicted RBP11.93□□□□□ -0.5
MSH6-201ENST00000234420 CXCR5P32302 372 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 PLTPP55058 493 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 MTERF2Q49AM1 385 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 TTLL7Q6ZT98 887 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 FBXO11Q86XK2 927 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 USP28Q96RU2 1077 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 SCAF8Q9UPN6 1271 aaKnown RBP11.93□□□□□ -0.5
MSH6-201ENST00000234420 PCDHA1Q9Y5I3 950 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 SGK1O00141 431 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 BRD1O95696 1058 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 SLC7A5Q01650 507 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 RFX6Q8HWS3 928 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 CNOT10Q9H9A5 744 aaKnown RBP11.93□□□□□ -0.5
MSH6-201ENST00000234420 VPS54Q9P1Q0 977 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 ADGRF5Q8IZF2 1346 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 MRC2Q9UBG0 1479 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 WDR64B1ANS9 1081 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 MAP3K13O43283 966 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 DEAF1O75398 565 aaPredicted RBP11.93□□□□□ -0.5
MSH6-201ENST00000234420 SEC24DO94855 1032 aaPredicted RBP11.93□□□□□ -0.5
MSH6-201ENST00000234420 CASP8Q14790 479 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 TJAP1Q5JTD0 557 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 CHURC1Q8WUH1 139 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.93□□□□□ -0.5
MSH6-201ENST00000234420 RUNDC3BQ96NL0 473 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 ADAM21Q9UKJ8 722 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 PPIEQ9UNP9 301 aaKnown RBP11.93□□□□□ -0.5
MSH6-201ENST00000234420 KCNH4Q9UQ05 1017 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 TRAF3IP3Q9Y228 551 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 A0A0G2JND7 137 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 PNMA6AP0CW24 399 aaPredicted RBP11.93□□□□□ -0.5
MSH6-201ENST00000234420 CC2D1AQ6P1N0 951 aaPredicted RBP11.93□□□□□ -0.5
MSH6-201ENST00000234420 DHX32Q7L7V1 743 aaKnown RBP11.93□□□□□ -0.5
MSH6-201ENST00000234420 TEKT4Q8WW24 435 aa11.93□□□□□ -0.5
MSH6-201ENST00000234420 GFM2Q969S9 779 aaKnown RBP11.93□□□□□ -0.5
MSH6-201ENST00000234420 KLC4Q9NSK0 619 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms