RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 TRIOO75962 3097 aa9.1□□□□□ -0.95
CLK1-215ENST00000621181 RSPH10B2B2RC85 870 aa9.1□□□□□ -0.95
CLK1-215ENST00000621181 H3BQ06 376 aaPredicted RBP9.1□□□□□ -0.95
CLK1-215ENST00000621181 RBAK-RBAKDNI3L0D1 243 aa9.1□□□□□ -0.95
CLK1-215ENST00000621181 PPFIA4O75335 1185 aa9.1□□□□□ -0.95
CLK1-215ENST00000621181 PARP1P09874 1014 aaKnown RBP9.1□□□□□ -0.95
CLK1-215ENST00000621181 RSPH10BP0C881 870 aa9.1□□□□□ -0.95
CLK1-215ENST00000621181 MYCLP12524 364 aaPredicted RBP9.1□□□□□ -0.95
CLK1-215ENST00000621181 TRIM71Q2Q1W2 868 aaKnown RBP9.1□□□□□ -0.95
CLK1-215ENST00000621181 HSDL1Q3SXM5 330 aa9.1□□□□□ -0.95
CLK1-215ENST00000621181 EPC2Q52LR7 807 aa9.1□□□□□ -0.95
CLK1-215ENST00000621181 KCNV1Q6PIU1 500 aa9.1□□□□□ -0.95
CLK1-215ENST00000621181 TICAM2Q86XR7 235 aa9.1□□□□□ -0.95
CLK1-215ENST00000621181 MYO7AQ13402 2215 aa9.1□□□□□ -0.95
CLK1-215ENST00000621181 GGPS1O95749 300 aa9.09□□□□□ -0.95
CLK1-215ENST00000621181 NT5C2P49902 561 aa9.09□□□□□ -0.95
CLK1-215ENST00000621181 NBR1Q14596 966 aa9.09□□□□□ -0.95
CLK1-215ENST00000621181 PUS10Q3MIT2 529 aaKnown RBP9.09□□□□□ -0.95
CLK1-215ENST00000621181 TIGD5Q53EQ6 642 aa9.09□□□□□ -0.95
CLK1-215ENST00000621181 CELF3Q5SZQ8 465 aaKnown RBP9.09□□□□□ -0.95
CLK1-215ENST00000621181 MYSM1Q5VVJ2 828 aa9.09□□□□□ -0.95
CLK1-215ENST00000621181 TRAF7Q6Q0C0 670 aa9.09□□□□□ -0.95
CLK1-215ENST00000621181 SERINC5Q86VE9 423 aa9.09□□□□□ -0.95
CLK1-215ENST00000621181 BANK1Q8NDB2 785 aa9.09□□□□□ -0.95
CLK1-215ENST00000621181 ATP6V0A1Q93050 837 aa9.09□□□□□ -0.95
CLK1-215ENST00000621181 ZSCAN10Q96SZ4 725 aaPredicted RBP9.09□□□□□ -0.95
CLK1-215ENST00000621181 AMNQ9BXJ7 453 aa9.09□□□□□ -0.95
CLK1-215ENST00000621181 C17orf102A2RUQ5 167 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 GRXCR2A6NFK2 248 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 B4E1Z4 1266 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 H3BRB1 525 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 UPP2O95045 317 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 HSD17B4P51659 736 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 HTRA4P83105 476 aaPredicted RBP9.08□□□□□ -0.96
CLK1-215ENST00000621181 HIC1Q14526 733 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 ALYREFQ86V81 257 aaKnown RBP9.08□□□□□ -0.96
CLK1-215ENST00000621181 ENAHQ8N8S7 591 aaPredicted RBP9.08□□□□□ -0.96
CLK1-215ENST00000621181 SEPT8Q92599 483 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 SAMD11Q96NU1 681 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 PDCD2LQ9BRP1 358 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 UBAC1Q9BSL1 405 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 TUT1Q9H6E5 874 aaKnown RBP9.08□□□□□ -0.96
CLK1-215ENST00000621181 JMJD4Q9H9V9 463 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 MLXIPQ9HAP2 919 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 RTN4Q9NQC3 1192 aaKnown RBP9.08□□□□□ -0.96
CLK1-215ENST00000621181 FAM50BQ9Y247 325 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 NOP56O00567 594 aaKnown RBP9.08□□□□□ -0.96
CLK1-215ENST00000621181 DCXO43602 365 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 RGS20O76081 388 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 CTSHP09668 335 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 TGFB3P10600 412 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 HOXD8P13378 290 aaPredicted RBP9.08□□□□□ -0.96
CLK1-215ENST00000621181 UBA1P22314 1058 aaKnown RBP9.08□□□□□ -0.96
CLK1-215ENST00000621181 HOXA13P31271 388 aaPredicted RBP9.08□□□□□ -0.96
CLK1-215ENST00000621181 AAMPQ13685 434 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 PGM5Q15124 567 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 PLEKHG4Q58EX7 1191 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 NEK9Q8TD19 979 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 TOP1MTQ969P6 601 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 RNF25Q96BH1 459 aaPredicted RBP9.08□□□□□ -0.96
CLK1-215ENST00000621181 C16orf70Q9BSU1 422 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 IFIH1Q9BYX4 1025 aaKnown RBP9.08□□□□□ -0.96
CLK1-215ENST00000621181 ZSWIM5Q9P217 1185 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 PCDHA1Q9Y5I3 950 aa9.08□□□□□ -0.96
CLK1-215ENST00000621181 H3BNC9 293 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 OPLAHO14841 1288 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 ZBTB5O15062 677 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 SMIM10L2AP0DMW4 78 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 SMIM10L2BP0DMW5 78 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 SDSP20132 328 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 SP2Q02086 613 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 GPM6BQ13491 265 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 IMMTQ16891 758 aaKnown RBP9.07□□□□□ -0.96
CLK1-215ENST00000621181 TCEAL5Q5H9L2 206 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 IFIT1BQ5T764 474 aaKnown RBP9.07□□□□□ -0.96
CLK1-215ENST00000621181 CWC27Q6UX04 472 aaKnown RBP9.07□□□□□ -0.96
CLK1-215ENST00000621181 STOX1Q6ZVD7 989 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 VSIG10LQ86VR7 867 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 TMEM192Q8IY95 271 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 STAG2Q8N3U4 1231 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 ANKS1AQ92625 1134 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 PABPC5Q96DU9 382 aaKnown RBP9.07□□□□□ -0.96
CLK1-215ENST00000621181 LNPKQ9C0E8 428 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 NSUN3Q9H649 340 aaKnown RBP9.07□□□□□ -0.96
CLK1-215ENST00000621181 CLDND1Q9NY35 253 aa9.07□□□□□ -0.96
CLK1-215ENST00000621181 MAP3K20Q9NYL2 800 aaKnown RBP9.07□□□□□ -0.96
CLK1-215ENST00000621181 KLRF2D3W0D1 207 aa9.06□□□□□ -0.96
CLK1-215ENST00000621181 TREHO43280 583 aa9.06□□□□□ -0.96
CLK1-215ENST00000621181 CAND2O75155 1236 aa9.06□□□□□ -0.96
CLK1-215ENST00000621181 LGALS2P05162 132 aa9.06□□□□□ -0.96
CLK1-215ENST00000621181 GNAT1P11488 350 aa9.06□□□□□ -0.96
CLK1-215ENST00000621181 CCND2P30279 289 aa9.06□□□□□ -0.96
CLK1-215ENST00000621181 FCHSD1Q86WN1 690 aa9.06□□□□□ -0.96
CLK1-215ENST00000621181 HOMER1Q86YM7 354 aa9.06□□□□□ -0.96
CLK1-215ENST00000621181 IL31RAQ8NI17 732 aa9.06□□□□□ -0.96
CLK1-215ENST00000621181 ZFP91Q96JP5 570 aaPredicted RBP9.06□□□□□ -0.96
CLK1-215ENST00000621181 USP26Q9BXU7 913 aa9.06□□□□□ -0.96
CLK1-215ENST00000621181 KRT23Q9C075 422 aa9.06□□□□□ -0.96
CLK1-215ENST00000621181 RNPEPQ9H4A4 650 aa9.06□□□□□ -0.96
CLK1-215ENST00000621181 CNNM2Q9H8M5 875 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms