RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 PPP1R18Q6NYC8 613 aa21.89■■□□□ 1.09
CCDC28A-203ENST00000617445 GPR20Q99678 358 aa21.89■■□□□ 1.09
CCDC28A-203ENST00000617445 GLT8D2Q9H1C3 349 aa21.89■■□□□ 1.09
CCDC28A-203ENST00000617445 BRPF3Q9ULD4 1205 aa21.89■■□□□ 1.09
CCDC28A-203ENST00000617445 KAT6AQ92794 2004 aa21.89■■□□□ 1.09
CCDC28A-203ENST00000617445 CNTNAP5Q8WYK1 1306 aa21.88■■□□□ 1.09
CCDC28A-203ENST00000617445 CCDC196A0A1B0GTZ2 297 aa21.88■■□□□ 1.09
CCDC28A-203ENST00000617445 hCG_1642624A0A1W2PR95 340 aa21.88■■□□□ 1.09
CCDC28A-203ENST00000617445 DLL1O00548 723 aa21.88■■□□□ 1.09
CCDC28A-203ENST00000617445 REC8O95072 547 aa21.88■■□□□ 1.09
CCDC28A-203ENST00000617445 CXCL10P02778 98 aa21.88■■□□□ 1.09
CCDC28A-203ENST00000617445 GNAT1P11488 350 aa21.88■■□□□ 1.09
CCDC28A-203ENST00000617445 FGD1P98174 961 aa21.88■■□□□ 1.09
CCDC28A-203ENST00000617445 NKX2-4Q9H2Z4 354 aa21.88■■□□□ 1.09
CCDC28A-203ENST00000617445 ZNF215Q9UL58 517 aaPredicted RBP21.88■■□□□ 1.09
CCDC28A-203ENST00000617445 YBX2Q9Y2T7 364 aaKnown RBP21.88■■□□□ 1.09
CCDC28A-203ENST00000617445 C17orf102A2RUQ5 167 aa21.87■■□□□ 1.09
CCDC28A-203ENST00000617445 KIF28PB7ZC32 967 aa21.87■■□□□ 1.09
CCDC28A-203ENST00000617445 EFCAB14O75071 495 aa21.87■■□□□ 1.09
CCDC28A-203ENST00000617445 FOSP01100 380 aaPredicted RBP21.87■■□□□ 1.09
CCDC28A-203ENST00000617445 HOXC8P31273 242 aa21.87■■□□□ 1.09
CCDC28A-203ENST00000617445 HSPA4P34932 840 aa21.87■■□□□ 1.09
CCDC28A-203ENST00000617445 TRIM71Q2Q1W2 868 aaKnown RBP21.87■■□□□ 1.09
CCDC28A-203ENST00000617445 SERINC5Q86VE9 423 aa21.87■■□□□ 1.09
CCDC28A-203ENST00000617445 FBXL16Q8N461 479 aa21.87■■□□□ 1.09
CCDC28A-203ENST00000617445 TCEANC2Q96MN5 208 aa21.87■■□□□ 1.09
CCDC28A-203ENST00000617445 BCAS3Q9H6U6 928 aa21.87■■□□□ 1.09
CCDC28A-203ENST00000617445 PCDHA6Q9UN73 950 aa21.87■■□□□ 1.09
CCDC28A-203ENST00000617445 PCDHA8Q9Y5H6 950 aa21.87■■□□□ 1.09
CCDC28A-203ENST00000617445 DOCK5Q9H7D0 1870 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 KLF18A0A0U1RQI7 1052 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 GOLGA8AA7E2F4 631 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 GOLGA8BA8MQT2 603 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 EPB41L2O43491 1005 aaKnown RBP21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 SMIM10L2AP0DMW4 78 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 SMIM10L2BP0DMW5 78 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 KCNJ6P48051 423 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 RABGGTBP53611 331 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 FUT2Q10981 343 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 WWC2Q6AWC2 1192 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 CNKSR3Q6P9H4 555 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 ATP6V0A1Q93050 837 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 RIC8AQ9NPQ8 531 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 UBIAD1Q9Y5Z9 338 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 V9GY48 417 aaPredicted RBP21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 CHD9Q3L8U1 2897 aa21.86■■□□□ 1.09
CCDC28A-203ENST00000617445 EMSYQ7Z589 1322 aa21.85■■□□□ 1.09
CCDC28A-203ENST00000617445 ABHD14A-ACY1A0A1B0GW23 586 aa21.85■■□□□ 1.09
CCDC28A-203ENST00000617445 CAND2O75155 1236 aa21.85■■□□□ 1.09
CCDC28A-203ENST00000617445 ITGB5P18084 799 aa21.85■■□□□ 1.09
CCDC28A-203ENST00000617445 NAPAP54920 295 aa21.85■■□□□ 1.09
CCDC28A-203ENST00000617445 ZNF200P98182 395 aaPredicted RBP21.85■■□□□ 1.09
CCDC28A-203ENST00000617445 MTMR1Q13613 665 aa21.85■■□□□ 1.09
CCDC28A-203ENST00000617445 GPNMBQ14956 572 aa21.85■■□□□ 1.09
CCDC28A-203ENST00000617445 UBE2SQ16763 222 aa21.85■■□□□ 1.09
CCDC28A-203ENST00000617445 PPP2R2DQ66LE6 453 aa21.85■■□□□ 1.09
CCDC28A-203ENST00000617445 BLOC1S2Q6QNY1 142 aa21.85■■□□□ 1.09
CCDC28A-203ENST00000617445 PRDM12Q9H4Q4 367 aa21.85■■□□□ 1.09
CCDC28A-203ENST00000617445 JADE2Q9NQC1 790 aa21.85■■□□□ 1.09
CCDC28A-203ENST00000617445 UNC80Q8N2C7 3258 aa21.84■■□□□ 1.09
CCDC28A-203ENST00000617445 NBNO60934 754 aa21.84■■□□□ 1.09
CCDC28A-203ENST00000617445 NEFLP07196 543 aa21.84■■□□□ 1.09
CCDC28A-203ENST00000617445 KCNA2P16389 499 aa21.84■■□□□ 1.09
CCDC28A-203ENST00000617445 PSMA5P28066 241 aa21.84■■□□□ 1.09
CCDC28A-203ENST00000617445 ZNF618Q5T7W0 954 aa21.84■■□□□ 1.09
CCDC28A-203ENST00000617445 HERC6Q8IVU3 1022 aa21.84■■□□□ 1.09
CCDC28A-203ENST00000617445 RNPEPQ9H4A4 650 aa21.84■■□□□ 1.09
CCDC28A-203ENST00000617445 FAM217BQ9NTX9 383 aaPredicted RBP21.84■■□□□ 1.09
CCDC28A-203ENST00000617445 BARHL2Q9NY43 387 aa21.84■■□□□ 1.09
CCDC28A-203ENST00000617445 SNX14Q9Y5W7 946 aa21.84■■□□□ 1.09
CCDC28A-203ENST00000617445 METAP2P50579 478 aaKnown RBP eCLIP21.83■■□□□ 1.09
CCDC28A-203ENST00000617445 ADCY7P51828 1080 aa21.83■■□□□ 1.09
CCDC28A-203ENST00000617445 IKBKEQ14164 716 aa21.83■■□□□ 1.09
CCDC28A-203ENST00000617445 HIC1Q14526 733 aa21.83■■□□□ 1.09
CCDC28A-203ENST00000617445 TRAF7Q6Q0C0 670 aa21.83■■□□□ 1.09
CCDC28A-203ENST00000617445 SEPT1Q8WYJ6 367 aa21.83■■□□□ 1.09
CCDC28A-203ENST00000617445 JAKMIP1Q96N16 626 aaKnown RBP21.83■■□□□ 1.09
CCDC28A-203ENST00000617445 NRCAMQ92823 1304 aa21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 RSPH10B2B2RC85 870 aa21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 STXBP3O00186 592 aa21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 ATP9AO75110 1047 aa21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 RSPH10BP0C881 870 aa21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 MYOGP15173 224 aa21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 CDC27P30260 824 aa21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 THPOP40225 353 aa21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 WDR5P61964 334 aaKnown RBP21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 AP3B2Q13367 1082 aa21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 UTP14CQ5TAP6 766 aaKnown RBP21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 Q6ZUG5 572 aa21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 WNT8BQ93098 351 aa21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 NAP1L2Q9ULW6 460 aaPredicted RBP21.82■■□□□ 1.08
CCDC28A-203ENST00000617445 SMCO2A6NFE2 343 aa21.81■■□□□ 1.08
CCDC28A-203ENST00000617445 TREHO43280 583 aa21.81■■□□□ 1.08
CCDC28A-203ENST00000617445 LGR5O75473 907 aa21.81■■□□□ 1.08
CCDC28A-203ENST00000617445 TCF7P36402 384 aaPredicted RBP21.81■■□□□ 1.08
CCDC28A-203ENST00000617445 MCTP2Q6DN12 878 aa21.81■■□□□ 1.08
CCDC28A-203ENST00000617445 MXRA8Q9BRK3 442 aa21.81■■□□□ 1.08
CCDC28A-203ENST00000617445 AGXT2Q9BYV1 514 aa21.81■■□□□ 1.08
CCDC28A-203ENST00000617445 PRUNE2Q8WUY3 3088 aa21.81■■□□□ 1.08
CCDC28A-203ENST00000617445 NID2Q14112 1375 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms