RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 RB1P06400 928 aa19.65■□□□□ 0.74
VPS29-204ENST00000548259 MKRN4PQ13434 485 aaPredicted RBP19.65■□□□□ 0.74
VPS29-204ENST00000548259 GNPTABQ3T906 1256 aa19.65■□□□□ 0.74
VPS29-204ENST00000548259 STOX1Q6ZVD7 989 aa19.65■□□□□ 0.74
VPS29-204ENST00000548259 C16orf70Q9BSU1 422 aa19.65■□□□□ 0.74
VPS29-204ENST00000548259 NEDD4P46934 1319 aa19.65■□□□□ 0.74
VPS29-204ENST00000548259 SIP14410 1827 aa19.65■□□□□ 0.74
VPS29-204ENST00000548259 PTPRSQ13332 1948 aa19.64■□□□□ 0.74
VPS29-204ENST00000548259 SORBS3O60504 671 aa19.64■□□□□ 0.73
VPS29-204ENST00000548259 CTSHP09668 335 aa19.64■□□□□ 0.73
VPS29-204ENST00000548259 SMIM10L2AP0DMW4 78 aa19.64■□□□□ 0.73
VPS29-204ENST00000548259 SMIM10L2BP0DMW5 78 aa19.64■□□□□ 0.73
VPS29-204ENST00000548259 UBA1P22314 1058 aaKnown RBP19.64■□□□□ 0.73
VPS29-204ENST00000548259 CTNNB1P35222 781 aa19.64■□□□□ 0.73
VPS29-204ENST00000548259 GHRHRQ02643 423 aa19.64■□□□□ 0.73
VPS29-204ENST00000548259 COL19A1Q14993 1142 aa19.64■□□□□ 0.73
VPS29-204ENST00000548259 PPP2R3CQ969Q6 453 aa19.64■□□□□ 0.73
VPS29-204ENST00000548259 RILPL2Q969X0 211 aa19.64■□□□□ 0.73
VPS29-204ENST00000548259 FBXL18Q96ME1 805 aa19.64■□□□□ 0.73
VPS29-204ENST00000548259 KRT23Q9C075 422 aa19.64■□□□□ 0.73
VPS29-204ENST00000548259 ZNF215Q9UL58 517 aaPredicted RBP19.64■□□□□ 0.73
VPS29-204ENST00000548259 PCDHA1Q9Y5I3 950 aa19.64■□□□□ 0.73
VPS29-204ENST00000548259 C19orf67A6NJJ6 358 aa19.63■□□□□ 0.73
VPS29-204ENST00000548259 GCOM1H8Y6P7 765 aaPredicted RBP19.63■□□□□ 0.73
VPS29-204ENST00000548259 POLR2MP0CAP2 368 aa19.63■□□□□ 0.73
VPS29-204ENST00000548259 PGM5Q15124 567 aa19.63■□□□□ 0.73
VPS29-204ENST00000548259 RPAINQ86UA6 219 aa19.63■□□□□ 0.73
VPS29-204ENST00000548259 ENAHQ8N8S7 591 aaPredicted RBP19.63■□□□□ 0.73
VPS29-204ENST00000548259 CNNM2Q9H8M5 875 aa19.63■□□□□ 0.73
VPS29-204ENST00000548259 ZBTB5O15062 677 aa19.62■□□□□ 0.73
VPS29-204ENST00000548259 TREHO43280 583 aa19.62■□□□□ 0.73
VPS29-204ENST00000548259 STAM2O75886 525 aa19.62■□□□□ 0.73
VPS29-204ENST00000548259 RGS20O76081 388 aa19.62■□□□□ 0.73
VPS29-204ENST00000548259 LGALS2P05162 132 aa19.62■□□□□ 0.73
VPS29-204ENST00000548259 HOXC8P31273 242 aa19.62■□□□□ 0.73
VPS29-204ENST00000548259 NEDD9Q14511 834 aa19.62■□□□□ 0.73
VPS29-204ENST00000548259 HIC1Q14526 733 aa19.62■□□□□ 0.73
VPS29-204ENST00000548259 IMMTQ16891 758 aaKnown RBP19.62■□□□□ 0.73
VPS29-204ENST00000548259 IFIT1BQ5T764 474 aaKnown RBP19.62■□□□□ 0.73
VPS29-204ENST00000548259 RNPEPQ9H4A4 650 aa19.62■□□□□ 0.73
VPS29-204ENST00000548259 B4E1Z4 1266 aa19.61■□□□□ 0.73
VPS29-204ENST00000548259 KLRF2D3W0D1 207 aa19.61■□□□□ 0.73
VPS29-204ENST00000548259 C5orf67F2Z3F1 127 aa19.61■□□□□ 0.73
VPS29-204ENST00000548259 SMAD2Q15796 467 aaKnown RBP19.61■□□□□ 0.73
VPS29-204ENST00000548259 RSPH3Q86UC2 560 aa19.61■□□□□ 0.73
VPS29-204ENST00000548259 ZSWIM5Q9P217 1185 aa19.61■□□□□ 0.73
VPS29-204ENST00000548259 COL4A6Q14031 1691 aa19.6■□□□□ 0.73
VPS29-204ENST00000548259 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.6■□□□□ 0.73
VPS29-204ENST00000548259 HOXA13P31271 388 aaPredicted RBP19.6■□□□□ 0.73
VPS29-204ENST00000548259 IRS1P35568 1242 aa19.6■□□□□ 0.73
VPS29-204ENST00000548259 BMPR1AP36894 532 aa19.6■□□□□ 0.73
VPS29-204ENST00000548259 SP2Q02086 613 aa19.6■□□□□ 0.73
VPS29-204ENST00000548259 PKN1Q16512 942 aa19.6■□□□□ 0.73
VPS29-204ENST00000548259 METTL7BQ6UX53 244 aa19.6■□□□□ 0.73
VPS29-204ENST00000548259 DIAPH3Q9NSV4 1193 aa19.6■□□□□ 0.73
VPS29-204ENST00000548259 SETD4Q9NVD3 440 aa19.6■□□□□ 0.73
VPS29-204ENST00000548259 HIP1O00291 1037 aa19.59■□□□□ 0.73
VPS29-204ENST00000548259 OPLAHO14841 1288 aa19.59■□□□□ 0.73
VPS29-204ENST00000548259 SDSP20132 328 aa19.59■□□□□ 0.73
VPS29-204ENST00000548259 ARHGAP4P98171 946 aa19.59■□□□□ 0.73
VPS29-204ENST00000548259 SMAD4Q13485 552 aaKnown RBP19.59■□□□□ 0.73
VPS29-204ENST00000548259 CTC1Q2NKJ3 1217 aa19.59■□□□□ 0.73
VPS29-204ENST00000548259 HERC4Q5GLZ8 1057 aaPredicted RBP19.59■□□□□ 0.73
VPS29-204ENST00000548259 HFE2Q6ZVN8 426 aa19.59■□□□□ 0.73
VPS29-204ENST00000548259 FCHSD1Q86WN1 690 aa19.59■□□□□ 0.73
VPS29-204ENST00000548259 PRRX2Q99811 253 aa19.59■□□□□ 0.73
VPS29-204ENST00000548259 KIAA1217Q5T5P2 1943 aa19.59■□□□□ 0.73
VPS29-204ENST00000548259 ADGRA3Q8IWK6 1321 aa19.58■□□□□ 0.73
VPS29-204ENST00000548259 NRCAMQ92823 1304 aa19.58■□□□□ 0.73
VPS29-204ENST00000548259 FAM26DQ5JW98 314 aa19.58■□□□□ 0.72
VPS29-204ENST00000548259 TAF2Q6P1X5 1199 aa19.58■□□□□ 0.72
VPS29-204ENST00000548259 PLVAPQ9BX97 442 aa19.58■□□□□ 0.72
VPS29-204ENST00000548259 STXBP3O00186 592 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 FIBPO43427 364 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 MBTPS2O43462 519 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 HYAL1Q12794 435 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 BTG3Q14201 252 aaPredicted RBP19.57■□□□□ 0.72
VPS29-204ENST00000548259 CLUL1Q15846 466 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 CYFIP1Q7L576 1253 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 HOMER1Q86YM7 354 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 STAG2Q8N3U4 1231 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 GIMAP8Q8ND71 665 aaPredicted RBP19.57■□□□□ 0.72
VPS29-204ENST00000548259 IL31RAQ8NI17 732 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 MTMR8Q96EF0 704 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 DSCC1Q9BVC3 393 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 MUTYHQ9UIF7 546 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 CD207Q9UJ71 328 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 MICAL3Q7RTP6 2002 aa19.57■□□□□ 0.72
VPS29-204ENST00000548259 RPLP2P05387 115 aaKnown RBP19.56■□□□□ 0.72
VPS29-204ENST00000548259 ICAM3P32942 547 aa19.56■□□□□ 0.72
VPS29-204ENST00000548259 LTBRP36941 435 aa19.56■□□□□ 0.72
VPS29-204ENST00000548259 HDAC1Q13547 482 aaPredicted RBP19.56■□□□□ 0.72
VPS29-204ENST00000548259 CWC27Q6UX04 472 aaKnown RBP19.56■□□□□ 0.72
VPS29-204ENST00000548259 RNF135Q8IUD6 432 aa19.56■□□□□ 0.72
VPS29-204ENST00000548259 CLP1Q92989 425 aaKnown RBP19.56■□□□□ 0.72
VPS29-204ENST00000548259 INPP4AQ96PE3 977 aaPredicted RBP19.56■□□□□ 0.72
VPS29-204ENST00000548259 IGFLR1Q9H665 355 aa19.56■□□□□ 0.72
VPS29-204ENST00000548259 SPATA31C2B4DYI2 1134 aa19.55■□□□□ 0.72
VPS29-204ENST00000548259 GRM6O15303 877 aa19.55■□□□□ 0.72
VPS29-204ENST00000548259 MMP1P03956 469 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms