RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 KRT26Q7Z3Y9 468 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 IL31RAQ8NI17 732 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 ANKRD7Q92527 254 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 RAVER2Q9HCJ3 691 aaKnown RBP12.32□□□□□ -0.44
CUX1-212ENST00000547394 COL20A1Q9P218 1284 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 GUCA1BQ9UMX6 200 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 REXO2Q9Y3B8 237 aaKnown RBP12.32□□□□□ -0.44
CUX1-212ENST00000547394 SORBS3O60504 671 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 CBX1P83916 185 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 AP3B2Q13367 1082 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 ORC2Q13416 577 aaPredicted RBP12.32□□□□□ -0.44
CUX1-212ENST00000547394 BTNL9Q6UXG8 535 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 MYOCDQ8IZQ8 938 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 NLGN2Q8NFZ4 835 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 REEP2Q9BRK0 252 aa12.32□□□□□ -0.44
CUX1-212ENST00000547394 PEX10O60683 326 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 PRPF6O94906 941 aaKnown RBP12.31□□□□□ -0.44
CUX1-212ENST00000547394 ALAS1P13196 640 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 ARHGAP29Q52LW3 1261 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 LRRC55Q6ZSA7 311 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 SFR1Q86XK3 245 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 SCFD1Q8WVM8 642 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 HOOK2Q96ED9 719 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 WRAP73Q9P2S5 460 aaPredicted RBP12.31□□□□□ -0.44
CUX1-212ENST00000547394 CCPG1Q9ULG6 757 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 DUSP10Q9Y6W6 482 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 ITIH6Q6UXX5 1313 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 IGLV3-22A0A075B6J6 115 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 CYP3A7-CYP3A51PA0A087WV96 503 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 GCOM1H8Y6P7 765 aaPredicted RBP12.31□□□□□ -0.44
CUX1-212ENST00000547394 ENC1O14682 589 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 POLR2MP0CAP2 368 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 MYBP10242 640 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 CYP3A7P24462 503 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 SLC12A3P55017 1021 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 MTMR2Q13614 643 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 PLS1Q14651 629 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 FBXO38Q6PIJ6 1188 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 SLC35F6Q8N357 371 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 DYDC2Q96IM9 177 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 EIF2AK1Q9BQI3 630 aaKnown RBP12.31□□□□□ -0.44
CUX1-212ENST00000547394 L2HGDHQ9H9P8 463 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 NLRC4Q9NPP4 1024 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 PGAP2Q9UHJ9 254 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 PUF60Q9UHX1 559 aaKnown RBP12.31□□□□□ -0.44
CUX1-212ENST00000547394 HACL1Q9UJ83 578 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 VAV3Q9UKW4 847 aa12.31□□□□□ -0.44
CUX1-212ENST00000547394 PVALEFA0A1B0GWK0 134 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 TMEM150BA6NC51 233 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 DNM2P50570 870 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 EHHADHQ08426 723 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 LRCH2Q5VUJ6 765 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 BANK1Q8NDB2 785 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 AGBL3Q8NEM8 1001 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 OR8K1Q8NGG5 319 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 TEPSINQ96N21 525 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 NDST4Q9H3R1 872 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 RCCD1A6NED2 376 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 PHF20L1A8MW92 1017 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 KIF2AO00139 706 aaPredicted RBP12.3□□□□□ -0.44
CUX1-212ENST00000547394 CCP110O43303 1012 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 CCDC40Q4G0X9 1142 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 MUM1L1Q5H9M0 696 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 CYP26C1Q6V0L0 522 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 SLFN12Q8IYM2 578 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 GUF1Q8N442 669 aaKnown RBP12.3□□□□□ -0.44
CUX1-212ENST00000547394 MNS1Q8NEH6 495 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 NT5C3AQ9H0P0 336 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 CNOT7Q9UIV1 285 aaKnown RBP12.3□□□□□ -0.44
CUX1-212ENST00000547394 DNM3Q9UQ16 869 aa12.3□□□□□ -0.44
CUX1-212ENST00000547394 EPN1Q9Y6I3 576 aaPredicted RBP12.3□□□□□ -0.44
CUX1-212ENST00000547394 CLIC2O15247 247 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 FLOT1O75955 427 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 NDUFA10O95299 355 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 ARID5AQ03989 594 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 SPP2Q13103 211 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 GRIPAP1Q4V328 841 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 VWA3BQ502W6 1294 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 DEFB129Q9H1M3 183 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 PRDM10Q9NQV6 1147 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 PHLPP2Q6ZVD8 1323 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 ASNSP08243 561 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 ARHGAP25P42331 645 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 GIT2Q14161 759 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 Q4G0T1 1027 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 ZC2HC1CQ53FD0 456 aaPredicted RBP12.29□□□□□ -0.44
CUX1-212ENST00000547394 TEX35Q5T0J7 233 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 TMTC1Q8IUR5 882 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 CHURC1Q8WUH1 139 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 ERO1AQ96HE7 468 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 MBOAT7Q96N66 472 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 WDR11Q9BZH6 1224 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 RANBP17Q9H2T7 1088 aaKnown RBP12.29□□□□□ -0.44
CUX1-212ENST00000547394 EMILIN3Q9NT22 766 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 HDAC6Q9UBN7 1215 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 PCDHA2Q9Y5H9 948 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 ZNF541Q9H0D2 1346 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 KDM3AQ9Y4C1 1321 aa12.29□□□□□ -0.44
CUX1-212ENST00000547394 EIF2AK2P19525 551 aaKnown RBP12.28□□□□□ -0.44
CUX1-212ENST00000547394 HERVK_113P62684 666 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms