RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 AMACRQ9UHK6 382 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 SLC12A6Q9UHW9 1150 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 L3MBTL1Q9Y468 752 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 KAT6BQ8WYB5 2073 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 DCDC2CA8MYV0 355 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 CDC25CP30307 473 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 IFNAR2P48551 515 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 P3H4Q92791 437 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 PACSIN1Q9BY11 444 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 CUEDC2Q9H467 287 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 KANSL2Q9H9L4 492 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 TMOD3Q9NYL9 352 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 OR52Z1P0C646 297 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 XRCC4Q13426 336 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 NAB2Q15742 525 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 FAM83BQ5T0W9 1011 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 CCDC26Q8TAB7 109 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 ELAC2Q9BQ52 826 aaKnown RBP14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 PNMA2Q9UL42 364 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 USP54Q70EL1 1684 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 CCT8L1PA6NM43 557 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 EIF4E1BA6NMX2 242 aaKnown RBP14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 PGRMC1O00264 195 aaKnown RBP14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 HGSO14964 777 aaPredicted RBP14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 MMEP08473 750 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 TXKP42681 527 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 ASIC2Q16515 512 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 BRINP3Q76B58 766 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 ADGRA1Q86SQ6 560 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 C4orf32Q8N8J7 132 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 KIAA0895Q8NCT3 520 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 INPP4AQ96PE3 977 aaPredicted RBP14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 SPAG5Q96R06 1193 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 UTP11Q9Y3A2 253 aaKnown RBP14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 CD2APQ9Y5K6 639 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 LAMB4A4D0S4 1761 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 DISP2A7MBM2 1401 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 KIF1AQ12756 1690 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 PCDH11XQ9BZA7 1347 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 PCDH11YQ9BZA8 1340 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 FAM170AA1A519 330 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 ADAMTS2O95450 1211 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 IGHMBP2P38935 993 aaKnown RBP14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 UAP1Q16222 522 aaPredicted RBP14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 MEI1Q5TIA1 1274 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 EMC10Q5UCC4 262 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 XPO6Q96QU8 1125 aaKnown RBP14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 MAGEF1Q9HAY2 307 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 GGT7Q9UJ14 662 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 STK38LQ9Y2H1 464 aa14.06□□□□□ -0.16
SFSWAP-209ENST00000540469 AKAP11Q9UKA4 1901 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 MARCH6O60337 910 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 LCA5LO95447 670 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 IRX1P78414 480 aaPredicted RBP14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 MAP2K1Q02750 393 aaPredicted RBP14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 AGBL2Q5U5Z8 902 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 DAAM2Q86T65 1068 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 C1orf131Q8NDD1 294 aaKnown RBP14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 UHMK1Q8TAS1 419 aaKnown RBP14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 TBC1D22AQ8WUA7 517 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 BAP1Q92560 729 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 HOOK2Q96ED9 719 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 SPATS2LQ9NUQ6 558 aaKnown RBP14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 A0A087X0T9 212 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 FAM228BP0C875 321 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 IFI16Q16666 785 aaKnown RBP14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 PEX26Q7Z412 305 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 HOOK3Q86VS8 718 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 ARMC2Q8NEN0 867 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 NUCKS1Q9H1E3 243 aaKnown RBP14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 KDM4CQ9H3R0 1056 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 ZHX3Q9H4I2 956 aa14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 CNOT10Q9H9A5 744 aaKnown RBP14.05□□□□□ -0.16
SFSWAP-209ENST00000540469 ORC4O43929 436 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 CLSTN1O94985 981 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 ANP32DO95626 131 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 FLT3P36888 993 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 ARMC3Q5W041 872 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 ADAT2Q7Z6V5 191 aaKnown RBP14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 CCT6BQ92526 530 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 ATP6V0A2Q9Y487 856 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 ERVV-2B6SEH9 535 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 DNAJC8O75937 253 aaPredicted RBP14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 DNAAF5Q86Y56 855 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 MAGEC3Q8TD91 643 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 NEUROG2Q9H2A3 272 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 TBC1D7Q9P0N9 293 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 CEP72Q9P209 647 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 NOC2LQ9Y3T9 749 aaKnown RBP14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 CHD4Q14839 1912 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 TTI1O43156 1089 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 MGRN1O60291 552 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 KIF4AO95239 1232 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 CCNHP51946 323 aaPredicted RBP14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 NAPAP54920 295 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 SLC18A3Q16572 532 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 ANKS1AQ92625 1134 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 C7orf25Q9BPX7 421 aa14.04□□□□□ -0.16
SFSWAP-209ENST00000540469 CELF4Q9BZC1 486 aaKnown RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms