RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 MYCLP1P12525 358 aaPredicted RBP6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 EPHB3P54753 998 aa6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 MESP2Q0VG99 397 aa6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 TUSC3Q13454 348 aa6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 TMEM177Q53S58 311 aa6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 KCTD1Q719H9 257 aa6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 PTRH1Q86Y79 214 aaKnown RBP6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 AHI1Q8N157 1196 aa6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 PPM1KQ8N3J5 372 aa6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 POU5F2Q8N7G0 328 aa6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 TOE1Q96GM8 510 aaKnown RBP6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 CD244Q9BZW8 370 aa6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 NGRNQ9NPE2 291 aaKnown RBP6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 IRAK3Q9Y616 596 aa6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 ATP23Q9Y6H3 246 aa6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 M0R2C6 588 aa6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 KPNA6O60684 536 aa6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 CKMP06732 381 aa6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 GLDCP23378 1020 aa6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 JAM2P57087 298 aa6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 GRIN1Q05586 938 aa6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 HABP4Q5JVS0 413 aaKnown RBP6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 CD300LDQ6UXZ3 194 aa6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 ATG14Q6ZNE5 492 aa6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 FAM126BQ8IXS8 530 aa6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 RBM12BQ8IXT5 1001 aaKnown RBP6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 ARRDC4Q8NCT1 418 aa6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 FMNL2Q96PY5 1086 aa6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 SRPK3Q9UPE1 567 aa6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 PCDHA5Q9Y5H7 936 aa6.97□□□□□ -1.29
HMGB1P38-201ENST00000490557 RFXAPO00287 272 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 HIP1RO75146 1068 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 CYP2C8P10632 490 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 RAP1GAPP47736 663 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 NKX3-2P78367 333 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 LACTBP83111 547 aaPredicted RBP6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 TM4SF20Q53R12 229 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 FIGNQ5HY92 759 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 EGFLAMQ63HQ2 1017 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 CDCA2Q69YH5 1023 aaPredicted RBP6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 ABHD17CQ6PCB6 329 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 MIB1Q86YT6 1006 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 BHLHE22Q8NFJ8 381 aaPredicted RBP6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 CPA5Q8WXQ8 436 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 SIGLEC10Q96LC7 697 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 RIC8BQ9NVN3 520 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 DTLQ9NZJ0 730 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 CNOT6Q9ULM6 557 aaKnown RBP6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 SHROOM4Q9ULL8 1493 aa6.96□□□□□ -1.3
HMGB1P38-201ENST00000490557 SLC12A8A0AV02 714 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 ZNF561-AS1K7EIQ3 104 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 KCNK3O14649 394 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 PDE8AO60658 829 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 GLRX3O76003 335 aaKnown RBP6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 KCNA6P17658 529 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 MC3RP41968 323 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 STAT5AP42229 794 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 CACNB2Q08289 660 aaPredicted RBP6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 SART3Q15020 963 aaKnown RBP6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 ARHGAP44Q17R89 818 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 CT47A1Q5JQC4 288 aaPredicted RBP6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 BTBD8Q5XKL5 378 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 OVCH1Q7RTY7 1134 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 DDX1Q92499 740 aaKnown RBP6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 TARS2Q9BW92 718 aaKnown RBP6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 TMX1Q9H3N1 280 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 GCM1Q9NP62 436 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 PLA2G2DQ9UNK4 145 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 ZKSCAN5Q9Y2L8 839 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 CADPSQ9ULU8 1353 aa6.95□□□□□ -1.3
HMGB1P38-201ENST00000490557 MAN2B1O00754 1011 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 GAS7O60861 476 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 KRT37O76014 449 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 TSPAN15O95858 294 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 LTFP02788 710 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 AMY2AP04746 511 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 C1QTNF9P0C862 333 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 MED14OSP0DP75 135 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 AMY2BP19961 511 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 CANXP27824 592 aaKnown RBP6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 GJA4P35212 333 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 RNF187Q5TA31 235 aaPredicted RBP6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 ANKLE2Q86XL3 938 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 IGDCC3Q8IVU1 814 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 CHST14Q8NCH0 376 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 TTLL11Q8NHH1 800 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 SMARCC2Q8TAQ2 1214 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 CLEC4DQ8WXI8 215 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 SMURF1Q9HCE7 757 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 PCDH18Q9HCL0 1135 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 PRKAB1Q9Y478 270 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 IRS2Q9Y4H2 1338 aa6.94□□□□□ -1.3
HMGB1P38-201ENST00000490557 TCRBV5S4A2TA0A5A2 114 aa6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 SCDO00767 359 aa6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 PTPN1P18031 435 aaKnown RBP6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 FBLN1P23142 703 aa6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 CNGA1P29973 690 aa6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 EPHA5P54756 1037 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms