RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 TRIM6Q9C030 488 aaPredicted RBP8.57□□□□□ -1.04
USP4-211ENST00000485450 KIF9Q9HAQ2 790 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 FAN1Q9Y2M0 1017 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 SYNGAP1Q96PV0 1343 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 GOLGA6L4A6NEF3 574 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 NRDCO43847 1150 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 SNUPNO95149 360 aaKnown RBP8.57□□□□□ -1.04
USP4-211ENST00000485450 TXLNAP40222 546 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 FNTAP49354 379 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 HMGCS2P54868 508 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 ERVK-9P63128 1117 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 ERVK-24P63145 666 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 DAGLBQ8NCG7 672 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 ATL2Q8NHH9 583 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 P2RX7Q99572 595 aaKnown RBP8.57□□□□□ -1.04
USP4-211ENST00000485450 CD248Q9HCU0 757 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 LRRC10BA6NIK2 292 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 STRNO43815 780 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 NMT2O60551 498 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 ST3GAL1Q11201 340 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 BEND6Q5SZJ8 279 aaPredicted RBP8.57□□□□□ -1.04
USP4-211ENST00000485450 FAM71BQ8TC56 605 aa8.57□□□□□ -1.04
USP4-211ENST00000485450 B4E1Z4 1266 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 CYTH3O43739 400 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 FKTNO75072 461 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 BMP3P12645 472 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 SFPQP23246 707 aaKnown RBP eCLIP8.56□□□□□ -1.04
USP4-211ENST00000485450 GBP6Q6ZN66 633 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 TMTC3Q6ZXV5 915 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 ZSCAN29Q8IWY8 852 aaPredicted RBP8.56□□□□□ -1.04
USP4-211ENST00000485450 GIMAP7Q8NHV1 300 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 SOCS4Q8WXH5 440 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 CCDC97Q96F63 343 aaPredicted RBP8.56□□□□□ -1.04
USP4-211ENST00000485450 CRISPLD2Q9H0B8 497 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 MKNK2Q9HBH9 465 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 SH3GLB2Q9NR46 395 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 TMOD4Q9NZQ9 345 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 VPS37CA5D8V6 355 aaPredicted RBP8.56□□□□□ -1.04
USP4-211ENST00000485450 GOLGA6CA6NDK9 693 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 GOLGA6BA6NDN3 693 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 BECN2A8MW95 431 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 PPP1R11O60927 126 aaPredicted RBP8.56□□□□□ -1.04
USP4-211ENST00000485450 LARGE1O95461 756 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 GOLGA6DP0CG33 693 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 HOXD8P13378 290 aaPredicted RBP8.56□□□□□ -1.04
USP4-211ENST00000485450 PECAM1P16284 738 aaPredicted RBP8.56□□□□□ -1.04
USP4-211ENST00000485450 PSMA5P28066 241 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 PPP2R3AQ06190 1150 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 NEDD9Q14511 834 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 APOA5Q6Q788 366 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 CNNM3Q8NE01 707 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 GOLGA1Q92805 767 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 SPATA32Q96LK8 384 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 SENP2Q9HC62 589 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 GOLGA6AQ9NYA3 693 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 PTPN22Q9Y2R2 807 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 MRFAP1Q9Y605 127 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 ASTN1O14525 1302 aa8.56□□□□□ -1.04
USP4-211ENST00000485450 PFKFB2O60825 505 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 PTPREP23469 700 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 PAX3P23760 479 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 FAM47AQ5JRC9 791 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 MYSM1Q5VVJ2 828 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 IQCA1Q86XH1 822 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 FMNL3Q8IVF7 1028 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 PNMA1Q8ND90 353 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 SMARCC2Q8TAQ2 1214 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 ZNF296Q8WUU4 475 aaPredicted RBP8.55□□□□□ -1.04
USP4-211ENST00000485450 LEO1Q8WVC0 666 aaPredicted RBP8.55□□□□□ -1.04
USP4-211ENST00000485450 KCNN1Q92952 543 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 TRIM47Q96LD4 638 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 ZSCAN31Q96LW9 406 aaPredicted RBP8.55□□□□□ -1.04
USP4-211ENST00000485450 PLEKHG4BQ96PX9 1271 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 TRAIPQ9BWF2 469 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 SH2B1Q9NRF2 756 aaPredicted RBP8.55□□□□□ -1.04
USP4-211ENST00000485450 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.55□□□□□ -1.04
USP4-211ENST00000485450 ABCB11O95342 1321 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 CCDC83Q8IWF9 413 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 CCDC82Q8N4S0 544 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 SHISA4Q96DD7 197 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 SPATC1LQ9H0A9 340 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 UPF3AQ9H1J1 476 aaKnown RBP8.55□□□□□ -1.04
USP4-211ENST00000485450 JMJD4Q9H9V9 463 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 PRR12Q9ULL5 1215 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 MINDY4BA8MYZ0 360 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 PRC1O43663 620 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 N4BP1O75113 896 aaKnown RBP8.55□□□□□ -1.04
USP4-211ENST00000485450 NAT1P18440 290 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 STAT2P52630 851 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 ZBED6P86452 979 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 USP4Q13107 963 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 DGKZQ13574 1117 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 GNL2Q13823 731 aaKnown RBP8.55□□□□□ -1.04
USP4-211ENST00000485450 SLFN13Q68D06 897 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 KIRREL3Q8IZU9 778 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 FAM133AQ8N9E0 248 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 CHURC1Q8WUH1 139 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 ZBTB10Q96DT7 871 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 RAB21Q9UL25 225 aa8.55□□□□□ -1.04
USP4-211ENST00000485450 L1RE1Q9UN81 338 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 165.4 ms