RNA–Protein interactions for RNA: ENST00000484733.6

SCFD1-206, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 2,308 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-206ENST00000484733 NLRX1Q86UT6 975 aa13.21□□□□□ -0.3
SCFD1-206ENST00000484733 GIMAP8Q8ND71 665 aaPredicted RBP13.21□□□□□ -0.3
SCFD1-206ENST00000484733 MYL10Q9BUA6 226 aa13.21□□□□□ -0.3
SCFD1-206ENST00000484733 BCAS3Q9H6U6 928 aa13.21□□□□□ -0.3
SCFD1-206ENST00000484733 LMCD1Q9NZU5 365 aa13.21□□□□□ -0.3
SCFD1-206ENST00000484733 CHD9Q3L8U1 2897 aa13.2□□□□□ -0.3
SCFD1-206ENST00000484733 EPOPA6NHQ4 379 aa13.2□□□□□ -0.3
SCFD1-206ENST00000484733 TNFRSF10AO00220 468 aa13.2□□□□□ -0.3
SCFD1-206ENST00000484733 SORBS3O60504 671 aa13.2□□□□□ -0.3
SCFD1-206ENST00000484733 NFXL1Q6ZNB6 911 aa13.2□□□□□ -0.3
SCFD1-206ENST00000484733 TEX2Q8IWB9 1127 aa13.2□□□□□ -0.3
SCFD1-206ENST00000484733 PIBF1Q8WXW3 757 aa13.2□□□□□ -0.3
SCFD1-206ENST00000484733 ATP6V0A1Q93050 837 aa13.2□□□□□ -0.3
SCFD1-206ENST00000484733 GPRASP2Q96D09 838 aa13.2□□□□□ -0.3
SCFD1-206ENST00000484733 RAD9AQ99638 391 aa13.2□□□□□ -0.3
SCFD1-206ENST00000484733 RSPH10B2B2RC85 870 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 RFXAPO00287 272 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 NOP56O00567 594 aaKnown RBP13.19□□□□□ -0.3
SCFD1-206ENST00000484733 GJB5O95377 273 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 PLEKHA8P1O95397 391 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 RSPH10BP0C881 870 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 GNAT1P11488 350 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 DEFB103AP81534 67 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 USP17L6PQ6QN14 398 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 CYFIP1Q7L576 1253 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 SGMS1Q86VZ5 419 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 RNPEPQ9H4A4 650 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 RTEL1Q9NZ71 1219 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 UNC80Q8N2C7 3258 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 ADAM17P78536 824 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 PLEKHG4Q58EX7 1191 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 ARNTL2Q8WYA1 636 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 CDHR1Q96JP9 859 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 ZBED2Q9BTP6 218 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 PSTPIP2Q9H939 334 aa13.19□□□□□ -0.3
SCFD1-206ENST00000484733 CUL9Q8IWT3 2517 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 THPOP40225 353 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 ERVK-21P61565 698 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 GRB10Q13322 594 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 AAK1Q2M2I8 961 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 FAM26DQ5JW98 314 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 FANCBQ8NB91 859 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 CERS4Q9HA82 394 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 ZNF215Q9UL58 517 aaPredicted RBP13.18□□□□□ -0.3
SCFD1-206ENST00000484733 COG5Q9UP83 839 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 SLC12A7Q9Y666 1083 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 MYO9BQ13459 2157 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 DOCK5Q9H7D0 1870 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 TREHO43280 583 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 LPXNO60711 386 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 BMP2KLQ5H9B9 411 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 TMTC3Q6ZXV5 915 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 UBIAD1Q9Y5Z9 338 aa13.18□□□□□ -0.3
SCFD1-206ENST00000484733 COL4A4P53420 1690 aaPredicted RBP13.17□□□□□ -0.3
SCFD1-206ENST00000484733 MICAL3Q7RTP6 2002 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 LCHNA4D1U4 455 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 MAFGO15525 162 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 COL9A3Q14050 684 aaPredicted RBP13.17□□□□□ -0.3
SCFD1-206ENST00000484733 TSGA10IPQ3SY00 556 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 RPAINQ86UA6 219 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 DBF4BQ8NFT6 615 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 TGS1Q96RS0 853 aaKnown RBP13.17□□□□□ -0.3
SCFD1-206ENST00000484733 CDH23Q9H251 3354 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 A0A0C4DFX4 3053 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 AMHP03971 560 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 KCNA2P16389 499 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 HTRA4P83105 476 aaPredicted RBP13.17□□□□□ -0.3
SCFD1-206ENST00000484733 RNF20Q5VTR2 975 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 MICALL1Q8N3F8 863 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 SP7Q8TDD2 431 aaPredicted RBP13.17□□□□□ -0.3
SCFD1-206ENST00000484733 ADAMTS19Q8TE59 1207 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 SEPT8Q92599 483 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 RBM28Q9NW13 759 aaKnown RBP13.17□□□□□ -0.3
SCFD1-206ENST00000484733 INSL6Q9Y581 213 aa13.17□□□□□ -0.3
SCFD1-206ENST00000484733 COL4A6Q14031 1691 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 LINC01553A4QN01 128 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 BMP1P13497 986 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.16□□□□□ -0.34e-10■■■■□ 25.5
SCFD1-206ENST00000484733 TMCO2Q7Z6W1 182 aaPredicted RBP13.16□□□□□ -0.3
SCFD1-206ENST00000484733 IL27Q8NEV9 243 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 SEPT1Q8WYJ6 367 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 ANO2Q9NQ90 1003 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 JADE2Q9NQC1 790 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 SETD4Q9NVD3 440 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 NRCAMQ92823 1304 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 SIP14410 1827 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 EXOSC10Q01780 885 aaKnown RBP13.16□□□□□ -0.3
SCFD1-206ENST00000484733 UTP14CQ5TAP6 766 aaKnown RBP13.16□□□□□ -0.3
SCFD1-206ENST00000484733 SYNE3Q6ZMZ3 975 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 CENPQQ7L2Z9 268 aaPredicted RBP13.16□□□□□ -0.3
SCFD1-206ENST00000484733 CMTR1Q8N1G2 835 aaKnown RBP13.16□□□□□ -0.3
SCFD1-206ENST00000484733 APBB2Q92870 758 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 EHMT1Q9H9B1 1298 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 PCDHA6Q9UN73 950 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 TELO2Q9Y4R8 837 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 PCDHA8Q9Y5H6 950 aa13.16□□□□□ -0.3
SCFD1-206ENST00000484733 EYSQ5T1H1 3165 aa13.15□□□□□ -0.3
SCFD1-206ENST00000484733 GSTTP1A0A1W2PQM5 241 aa13.15□□□□□ -0.3
SCFD1-206ENST00000484733 ATP9AO75110 1047 aa13.15□□□□□ -0.3
SCFD1-206ENST00000484733 ITGB5P18084 799 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms