RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 DVL3Q92997 716 aaPredicted RBP5.97□□□□□ -1.45
VPS29-202ENST00000447578 MBD6Q96DN6 1003 aa5.97□□□□□ -1.45
VPS29-202ENST00000447578 TOE1Q96GM8 510 aaKnown RBP5.97□□□□□ -1.45
VPS29-202ENST00000447578 NGRNQ9NPE2 291 aaKnown RBP5.97□□□□□ -1.45
VPS29-202ENST00000447578 DTLQ9NZJ0 730 aa5.97□□□□□ -1.45
VPS29-202ENST00000447578 RBPJLQ9UBG7 517 aa5.97□□□□□ -1.45
VPS29-202ENST00000447578 CROTQ9UKG9 612 aa5.97□□□□□ -1.45
VPS29-202ENST00000447578 ZNF652Q9Y2D9 606 aa5.97□□□□□ -1.45
VPS29-202ENST00000447578 TADA3O75528 432 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 LRG1P02750 347 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 SCG5P05408 212 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 SSBP05455 408 aaKnown RBP eCLIP5.96□□□□□ -1.46
VPS29-202ENST00000447578 LSAMPQ13449 338 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 STEAP3Q658P3 488 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 MRM1Q6IN84 353 aaKnown RBP5.96□□□□□ -1.46
VPS29-202ENST00000447578 TEPPQ6URK8 271 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 TMEM145Q8NBT3 493 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 MICAL1Q8TDZ2 1067 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 SH3RF3Q8TEJ3 882 aaPredicted RBP5.96□□□□□ -1.46
VPS29-202ENST00000447578 YTHDC1Q96MU7 727 aaKnown RBP5.96□□□□□ -1.46
VPS29-202ENST00000447578 PTPN18Q99952 460 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 OSBPL2Q9H1P3 480 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 PIF1Q9H611 641 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 L2HGDHQ9H9P8 463 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 CLDND1Q9NY35 253 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 PCDHB4Q9Y5E5 795 aa5.96□□□□□ -1.46
VPS29-202ENST00000447578 C9orf118A6NHY6 69 aa5.95□□□□□ -1.46
VPS29-202ENST00000447578 SUSD5O60279 629 aa5.95□□□□□ -1.46
VPS29-202ENST00000447578 LTBRP36941 435 aa5.95□□□□□ -1.46
VPS29-202ENST00000447578 CDSNQ15517 529 aa5.95□□□□□ -1.46
VPS29-202ENST00000447578 ACBD5Q5T8D3 534 aaPredicted RBP5.95□□□□□ -1.46
VPS29-202ENST00000447578 TMC5Q6UXY8 1006 aa5.95□□□□□ -1.46
VPS29-202ENST00000447578 CKAP2LQ8IYA6 745 aa5.95□□□□□ -1.46
VPS29-202ENST00000447578 IGDCC4Q8TDY8 1250 aa5.95□□□□□ -1.46
VPS29-202ENST00000447578 ZCCHC14Q8WYQ9 949 aaKnown RBP5.95□□□□□ -1.46
VPS29-202ENST00000447578 CLIC6Q96NY7 704 aa5.95□□□□□ -1.46
VPS29-202ENST00000447578 SCAND2PQ9GZW5 306 aaPredicted RBP5.95□□□□□ -1.46
VPS29-202ENST00000447578 TMEM168Q9H0V1 697 aa5.95□□□□□ -1.46
VPS29-202ENST00000447578 ACTR10Q9NZ32 417 aa5.95□□□□□ -1.46
VPS29-202ENST00000447578 NPEPPSL1A6NEC2 478 aa5.94□□□□□ -1.46
VPS29-202ENST00000447578 H7BY64 318 aa5.94□□□□□ -1.46
VPS29-202ENST00000447578 GPR42O15529 346 aa5.94□□□□□ -1.46
VPS29-202ENST00000447578 DDAH1O94760 285 aa5.94□□□□□ -1.46
VPS29-202ENST00000447578 CPP00450 1065 aa5.94□□□□□ -1.46
VPS29-202ENST00000447578 GRIA2P42262 883 aa5.94□□□□□ -1.46
VPS29-202ENST00000447578 GFRA1P56159 465 aa5.94□□□□□ -1.46
VPS29-202ENST00000447578 BMS1Q14692 1282 aaKnown RBP5.94□□□□□ -1.46
VPS29-202ENST00000447578 PHF19Q5T6S3 580 aa5.94□□□□□ -1.46
VPS29-202ENST00000447578 ZNF662Q6ZS27 426 aa5.94□□□□□ -1.46
VPS29-202ENST00000447578 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.94□□□□□ -1.46
VPS29-202ENST00000447578 C1orf159Q96HA4 380 aa5.94□□□□□ -1.46
VPS29-202ENST00000447578 B4GALT4O60513 344 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 TESK1Q15569 626 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 CHRNA2Q15822 529 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 NFE2L2Q16236 605 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 EMC4Q5J8M3 183 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 SDE2Q6IQ49 451 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 KBTBD2Q8IY47 623 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 ANKRD13AQ8IZ07 590 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 Q8N1X5 172 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 KISS1RQ969F8 398 aaPredicted RBP5.93□□□□□ -1.46
VPS29-202ENST00000447578 CCDC140Q96MF4 163 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 CD248Q9HCU0 757 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 MYOTQ9UBF9 498 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 ZDHHC9Q9Y397 364 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 DCAF1Q9Y4B6 1507 aa5.93□□□□□ -1.46
VPS29-202ENST00000447578 DGKIO75912 1065 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 C6P13671 934 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 ETFBP38117 255 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 PPP2CBP62714 309 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 PPP2CAP67775 309 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 SURF1Q15526 300 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 ZNF585AQ6P3V2 769 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 PKN3Q6P5Z2 889 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 TRMT10BQ6PF06 316 aaKnown RBP5.92□□□□□ -1.46
VPS29-202ENST00000447578 PLEKHH3Q7Z736 793 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 RBM12BQ8IXT5 1001 aaKnown RBP5.92□□□□□ -1.46
VPS29-202ENST00000447578 MRFAP1L1Q96HT8 127 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 JAM3Q9BX67 310 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 CDIP1Q9H305 208 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 JADE2Q9NQC1 790 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 PPARGC1AQ9UBK2 798 aaKnown RBP5.92□□□□□ -1.46
VPS29-202ENST00000447578 TSC22D4Q9Y3Q8 395 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 TBX22Q9Y458 520 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 SBNO2Q9Y2G9 1366 aa5.92□□□□□ -1.46
VPS29-202ENST00000447578 CAPNS1P04632 268 aa5.91□□□□□ -1.46
VPS29-202ENST00000447578 SLC35F1Q5T1Q4 408 aa5.91□□□□□ -1.46
VPS29-202ENST00000447578 NBPF6Q5VWK0 638 aa5.91□□□□□ -1.46
VPS29-202ENST00000447578 PALM2Q8IXS6 379 aa5.91□□□□□ -1.46
VPS29-202ENST00000447578 NBPF4Q96M43 638 aa5.91□□□□□ -1.46
VPS29-202ENST00000447578 KLC2Q9H0B6 622 aa5.91□□□□□ -1.46
VPS29-202ENST00000447578 EPB41L1Q9H4G0 881 aa5.91□□□□□ -1.46
VPS29-202ENST00000447578 SLITRK6Q9H5Y7 841 aa5.91□□□□□ -1.46
VPS29-202ENST00000447578 ZNF408Q9H9D4 720 aa5.91□□□□□ -1.46
VPS29-202ENST00000447578 FTSJ1Q9UET6 329 aa5.91□□□□□ -1.46
VPS29-202ENST00000447578 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.91□□□□□ -1.46
VPS29-202ENST00000447578 SLC27A2O14975 620 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 MSCO60682 206 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 CLSTN1O94985 981 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 EPHB4P54760 987 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms