RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 TAL1P17542 331 aaPredicted RBP4.74□□□□□ -1.65
HMGB1-201ENST00000326004 AMY2BP19961 511 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 SDHBP21912 280 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 EPHA5P54756 1037 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 JAM2P57087 298 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 PRR5P85299 388 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 PCBP1Q15365 356 aaKnown RBP eCLIP4.74□□□□□ -1.65
HMGB1-201ENST00000326004 DHCR24Q15392 516 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 KCTD1Q719H9 257 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 MILR1Q7Z6M3 343 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 OSTM1Q86WC4 334 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 OR2W6PQ8NHA6 318 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 TTLL11Q8NHH1 800 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 BOCQ9BWV1 1114 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 EPB41L4BQ9H329 900 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 SMURF1Q9HCE7 757 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 ASH2LQ9UBL3 628 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 ZKSCAN5Q9Y2L8 839 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 SIT1Q9Y3P8 196 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 TCRBV5S2A0A599 114 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 TCRBV5S4A2TA0A5A2 114 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 TRAF5O00463 557 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 MAN2B1O00754 1011 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 CLASP2O75122 1294 aaKnown RBP4.73□□□□□ -1.65
HMGB1-201ENST00000326004 F2P00734 622 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 KRT15P19012 456 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 GJA4P35212 333 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 SCNN1BP51168 640 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 SART3Q15020 963 aaKnown RBP4.73□□□□□ -1.65
HMGB1-201ENST00000326004 ZNF605Q86T29 641 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 PTRH1Q86Y79 214 aaKnown RBP4.73□□□□□ -1.65
HMGB1-201ENST00000326004 MIB1Q86YT6 1006 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 SH3RF2Q8TEC5 729 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 LEO1Q8WVC0 666 aaPredicted RBP4.73□□□□□ -1.65
HMGB1-201ENST00000326004 LIN37Q96GY3 246 aaPredicted RBP4.73□□□□□ -1.65
HMGB1-201ENST00000326004 NSUN3Q9H649 340 aaKnown RBP4.73□□□□□ -1.65
HMGB1-201ENST00000326004 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.73□□□□□ -1.65
HMGB1-201ENST00000326004 RXFP1Q9HBX9 757 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 PCDH12Q9NPG4 1184 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 COL4A3BPQ9Y5P4 624 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 ATP23Q9Y6H3 246 aa4.73□□□□□ -1.65
HMGB1-201ENST00000326004 PTPDC1A2A3K4 754 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 SLC27A2O14975 620 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 HIP1RO75146 1068 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 VIPR1P32241 457 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 NFKB2Q00653 900 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 OCRLQ01968 901 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 DSG1Q02413 1049 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 TUSC3Q13454 348 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 SEPT7Q16181 437 aaKnown RBP4.72□□□□□ -1.65
HMGB1-201ENST00000326004 TMC6Q7Z403 805 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.72□□□□□ -1.65
HMGB1-201ENST00000326004 AMIGO3Q86WK7 504 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 NOSTRINQ8IVI9 506 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 FAM126BQ8IXS8 530 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 AFAP1L2Q8N4X5 818 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 ALG3Q92685 438 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 USP7Q93009 1102 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 NGRNQ9NPE2 291 aaKnown RBP4.72□□□□□ -1.65
HMGB1-201ENST00000326004 DCP1AQ9NPI6 582 aaPredicted RBP4.72□□□□□ -1.65
HMGB1-201ENST00000326004 SIRT5Q9NXA8 310 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 MCM8Q9UJA3 840 aa4.72□□□□□ -1.65
HMGB1-201ENST00000326004 NOP58Q9Y2X3 529 aaKnown RBP4.72□□□□□ -1.65
HMGB1-201ENST00000326004 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.72□□□□□ -1.65
HMGB1-201ENST00000326004 TEX51A0A1B0GUA7 166 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 LRRC10BA6NIK2 292 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 H7C1D1 291 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 ZEB2O60315 1214 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 BRINP1O60477 761 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 SEMA7AO75326 666 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 ZBTB48P10074 688 aaPredicted RBP4.71□□□□□ -1.66
HMGB1-201ENST00000326004 SRSF3P84103 164 aaKnown RBP4.71□□□□□ -1.66
HMGB1-201ENST00000326004 IRF9Q00978 393 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 AMPD3Q01432 767 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 TARBP2Q15633 366 aaKnown RBP4.71□□□□□ -1.66
HMGB1-201ENST00000326004 MLANAQ16655 118 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 MCTP1Q6DN14 999 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 ETV3LQ6ZN32 361 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 PRR23BQ6ZRT6 265 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 UBR7Q8N806 425 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 FBXO15Q8NCQ5 510 aaPredicted RBP4.71□□□□□ -1.66
HMGB1-201ENST00000326004 ARRDC4Q8NCT1 418 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 CPA5Q8WXQ8 436 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 GPATCH3Q96I76 525 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 SCYL1Q96KG9 808 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 DIRC2Q96SL1 478 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 TTC1Q99614 292 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 YIPF4Q9BSR8 244 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 CD244Q9BZW8 370 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 RNF38Q9H0F5 515 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 KCNH7Q9NS40 1196 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.71□□□□□ -1.664e-8■■■■■ 33.6
HMGB1-201ENST00000326004 DTLQ9NZJ0 730 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 HSPBP1Q9NZL4 362 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 HCFC2Q9Y5Z7 792 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 IRS2Q9Y4H2 1338 aa4.71□□□□□ -1.66
HMGB1-201ENST00000326004 hCG_2014768A0A024R1R8 64 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 ZNF891A8MT65 544 aaPredicted RBP4.7□□□□□ -1.66
HMGB1-201ENST00000326004 NCAM1P13591 858 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 BPIP17213 487 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms