RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 BCL2L12Q9HB09 334 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 NR1H3Q13133 447 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 TFCP2L1Q9NZI6 479 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 TESPA1A2RU30 521 aaPredicted RBP14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 C16orf62Q7Z3J2 963 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 JARID2Q92833 1246 aaPredicted RBP14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 ABCF3Q9NUQ8 709 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 SMARCA4P51532 1647 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 GOLGA8FQ08AF8 430 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 GOLGA8DPQ0D2H9 430 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 PHACTR3Q96KR7 559 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 ANGPT1Q15389 498 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 HABP4Q5JVS0 413 aaKnown RBP14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 TTLL11Q8NHH1 800 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 PARVGQ9HBI0 331 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 ATXN8OSP0DMR3 200 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 POLR2FP61218 127 aaKnown RBP14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 CUL1Q13616 776 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 XKR9Q5GH70 373 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 KRT27Q7Z3Y8 459 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 EIF2S1P05198 315 aaKnown RBP14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 AP1B1Q10567 949 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 TFCP2Q12800 502 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 LAMC2Q13753 1193 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 MESDQ14696 234 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 PYROXD1Q8WU10 500 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 OTULINQ96BN8 352 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 ALKBH8Q96BT7 664 aaKnown RBP14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 MRPL11Q9Y3B7 192 aaKnown RBP14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 CNBD2Q96M20 576 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 TEKT3Q9BXF9 490 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 KLHL31Q9H511 634 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 PRKAG2Q9UGJ0 569 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 GGA1Q9UJY5 639 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 ZNF711Q9Y462 761 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 WASLO00401 505 aaPredicted RBP14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 KRT37O76014 449 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 FOXD4Q12950 439 aaPredicted RBP14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 XPO4Q9C0E2 1151 aaKnown RBP14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 C10orf88Q9H8K7 445 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 ZNF408Q9H9D4 720 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 PKD2L2Q9NZM6 624 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 LRFN2Q9ULH4 789 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 ASXL1Q8IXJ9 1541 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 KIF23Q02241 960 aaPredicted RBP14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 C1orf146Q5VVC0 180 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 CNPY4Q8N129 248 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 NT5C1BQ96P26 610 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 HPCAL4Q9UM19 191 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 EPN1Q9Y6I3 576 aaPredicted RBP14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 RUNX1T1Q06455 604 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 NSMFQ6X4W1 530 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 LINS1Q8NG48 757 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 IL10P22301 178 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 NME9Q86XW9 330 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 NRBP2Q9NSY0 501 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 PRPSAP2O60256 369 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 KRT16P08779 473 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 HIBADHP31937 336 aaKnown RBP14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 EHHADHQ08426 723 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 TBC1D23Q9NUY8 699 aa14.97□□□□□ -0.01
CCDC88A-201ENST00000263630 RASSF9O75901 435 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 FMNL1O95466 1100 aaPredicted RBP14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 CYP4F22Q6NT55 531 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 RECQLP46063 649 aaPredicted RBP14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 PDIK1LQ8N165 341 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 TTC8Q8TAM2 541 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 APPBP2Q92624 585 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 STAMBPL1Q96FJ0 436 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 LRRC4Q9HBW1 653 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 DDX25Q9UHL0 483 aaKnown RBP14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 LRRIQ4A6NIV6 560 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 TTC23LQ6PF05 361 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 EML4Q9HC35 981 aaKnown RBP14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 BLOC1S6Q9UL45 172 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 MYO10Q9HD67 2058 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 ATAD2BQ9ULI0 1458 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 AKAP4Q5JQC9 854 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 ULK4Q96C45 1275 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 ZNF556Q9HAH1 456 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 TSC22D4Q9Y3Q8 395 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 WDR17Q8IZU2 1322 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 COPS2P61201 443 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 CCDC142Q17RM4 750 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 PCDHGB4Q9UN71 923 aa14.96□□□□□ -0.01
CCDC88A-201ENST00000263630 RINLQ6ZS11 566 aa14.96□□□□□ -0.02
CCDC88A-201ENST00000263630 ARMCX2Q7L311 632 aa14.96□□□□□ -0.02
CCDC88A-201ENST00000263630 ARHGEF25Q86VW2 580 aa14.96□□□□□ -0.02
CCDC88A-201ENST00000263630 FOXO3O43524 673 aa14.96□□□□□ -0.02
CCDC88A-201ENST00000263630 RBM6P78332 1123 aaKnown RBP14.96□□□□□ -0.02
CCDC88A-201ENST00000263630 KRR1Q13601 381 aaKnown RBP14.96□□□□□ -0.02
CCDC88A-201ENST00000263630 ZYXQ15942 572 aaKnown RBP14.96□□□□□ -0.02
CCDC88A-201ENST00000263630 TLK2Q86UE8 772 aa14.96□□□□□ -0.02
CCDC88A-201ENST00000263630 UHMK1Q8TAS1 419 aaKnown RBP14.96□□□□□ -0.02
CCDC88A-201ENST00000263630 RUBCNLQ9H714 662 aa14.96□□□□□ -0.02
CCDC88A-201ENST00000263630 CHMLP26374 656 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 TBC1D22AQ8WUA7 517 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 FSD1LQ9BXM9 530 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 ZMYND12Q9H0C1 365 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms