RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 PMS1P54277 932 aaKnown RBP11.09□□□□□ -0.63
VTA1-205ENST00000620996 KCNB1Q14721 858 aa11.09□□□□□ -0.63
VTA1-205ENST00000620996 SPECC1LQ69YQ0 1117 aa11.09□□□□□ -0.63
VTA1-205ENST00000620996 MCTP2Q6DN12 878 aa11.09□□□□□ -0.63
VTA1-205ENST00000620996 GPBP1Q86WP2 473 aa11.09□□□□□ -0.63
VTA1-205ENST00000620996 APOBEC3FQ8IUX4 373 aaKnown RBP11.09□□□□□ -0.63
VTA1-205ENST00000620996 CSGALNACT2Q8N6G5 542 aa11.09□□□□□ -0.63
VTA1-205ENST00000620996 PRPF38AQ8NAV1 312 aaKnown RBP11.09□□□□□ -0.63
VTA1-205ENST00000620996 C7orf25Q9BPX7 421 aa11.09□□□□□ -0.63
VTA1-205ENST00000620996 GPRC5DQ9NZD1 345 aa11.09□□□□□ -0.63
VTA1-205ENST00000620996 KDM3AQ9Y4C1 1321 aa11.09□□□□□ -0.63
VTA1-205ENST00000620996 USP27XA6NNY8 438 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 WDR46O15213 610 aaKnown RBP11.08□□□□□ -0.64
VTA1-205ENST00000620996 MSH4O15457 936 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 VCAM1P19320 739 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 HMGCS2P54868 508 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 KRT31Q15323 416 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 HAUS3Q68CZ6 603 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 NSMFQ6X4W1 530 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 TRMT1LQ7Z2T5 733 aaKnown RBP11.08□□□□□ -0.64
VTA1-205ENST00000620996 PCMTD1Q96MG8 357 aaPredicted RBP11.08□□□□□ -0.64
VTA1-205ENST00000620996 CTAGE1Q96RT6 745 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 NT5C3AQ9H0P0 336 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 MYH7BA7E2Y1 1941 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 NFIBO00712 420 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 MED24O75448 989 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 PLA2G4BP0C869 781 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 PABPC4Q13310 644 aaKnown RBP eCLIP11.08□□□□□ -0.64
VTA1-205ENST00000620996 CT47A1Q5JQC4 288 aaPredicted RBP11.08□□□□□ -0.64
VTA1-205ENST00000620996 GIMAP8Q8ND71 665 aaPredicted RBP11.08□□□□□ -0.64
VTA1-205ENST00000620996 POLD4Q9HCU8 107 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 KCNMB3Q9NPA1 279 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 PLS1Q14651 629 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 LRCH2Q5VUJ6 765 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 CNPY4Q8N129 248 aa11.08□□□□□ -0.64
VTA1-205ENST00000620996 ARFGEF1Q9Y6D6 1849 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 TPM1P09493 284 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 TNNT1P13805 278 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 MTIF2P46199 727 aaKnown RBP11.07□□□□□ -0.64
VTA1-205ENST00000620996 UBXN1Q04323 297 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 SCYL3Q8IZE3 742 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 LPAR1Q92633 364 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 LRRC27Q9C0I9 530 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 SPTLC3Q9NUV7 552 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 GAS7O60861 476 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 ZBED4O75132 1171 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 COPB1P53618 953 aaKnown RBP11.07□□□□□ -0.64
VTA1-205ENST00000620996 IRX5P78411 483 aaPredicted RBP11.07□□□□□ -0.64
VTA1-205ENST00000620996 SPAG1Q07617 926 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 TMEM119Q4V9L6 283 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 TCP11X2Q5H9J9 407 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 CDKAL1Q5VV42 579 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 UNC13DQ70J99 1090 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 MTERF4Q7Z6M4 381 aaKnown RBP11.07□□□□□ -0.64
VTA1-205ENST00000620996 TPH2Q8IWU9 490 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 GPC2Q8N158 579 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 ETNPPLQ8TBG4 499 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 P2RX5Q93086 422 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 KIAA1683Q9H0B3 1180 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 AS3MTQ9HBK9 375 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 PANK4Q9NVE7 773 aa11.07□□□□□ -0.64
VTA1-205ENST00000620996 CYP3A7-CYP3A51PA0A087WV96 503 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 A0A1B0GTH6 734 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 DYNC1I1O14576 645 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 ICAM1P05362 532 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 MYCLP12524 364 aaPredicted RBP11.06□□□□□ -0.64
VTA1-205ENST00000620996 CYP3A7P24462 503 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 CTTNQ14247 550 aaKnown RBP11.06□□□□□ -0.64
VTA1-205ENST00000620996 Q4G0T1 1027 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 HERC4Q5GLZ8 1057 aaPredicted RBP11.06□□□□□ -0.64
VTA1-205ENST00000620996 NELFCDQ8IXH7 590 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 ATG4CQ96DT6 458 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 ZNF577Q9BSK1 485 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 EMILIN3Q9NT22 766 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 RGL1Q9NZL6 768 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 DNM3Q9UQ16 869 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 BICDL2A1A5D9 508 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 TULP1O00294 542 aaPredicted RBP11.06□□□□□ -0.64
VTA1-205ENST00000620996 EIF2AK2P19525 551 aaKnown RBP11.06□□□□□ -0.64
VTA1-205ENST00000620996 USP14P54578 494 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 TTLL12Q14166 644 aaPredicted RBP11.06□□□□□ -0.64
VTA1-205ENST00000620996 NR1I3Q14994 352 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 ANKRD40Q6AI12 368 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 CATSPER3Q86XQ3 398 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 KIAA0895Q8NCT3 520 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 ZNF280CQ8ND82 737 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 WDR18Q9BV38 432 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 GTPBP4Q9BZE4 634 aaKnown RBP11.06□□□□□ -0.64
VTA1-205ENST00000620996 SMCHD1A6NHR9 2005 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 PIK3CDO00329 1044 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 MMP14P50281 582 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 HIRAP54198 1017 aaPredicted RBP11.06□□□□□ -0.64
VTA1-205ENST00000620996 PSMC6P62333 389 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 MAP3K10Q02779 954 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 GLIS3Q8NEA6 775 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 LENG9Q96B70 501 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 DHTKD1Q96HY7 919 aaPredicted RBP11.06□□□□□ -0.64
VTA1-205ENST00000620996 FAM20AQ96MK3 541 aa11.06□□□□□ -0.64
VTA1-205ENST00000620996 ADD3Q9UEY8 706 aaKnown RBP11.06□□□□□ -0.64
VTA1-205ENST00000620996 TCEAL9Q9UHQ7 104 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms