RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 PLEKHA8P1O95397 391 aa21.97■■□□□ 1.11
CCDC28A-203ENST00000617445 HMGB1P09429 215 aaKnown RBP21.97■■□□□ 1.11
CCDC28A-203ENST00000617445 IQCF3P0C7M6 154 aa21.97■■□□□ 1.11
CCDC28A-203ENST00000617445 UBA1P22314 1058 aaKnown RBP21.97■■□□□ 1.11
CCDC28A-203ENST00000617445 NEDD9Q14511 834 aa21.97■■□□□ 1.11
CCDC28A-203ENST00000617445 MFSD10Q14728 455 aa21.97■■□□□ 1.11
CCDC28A-203ENST00000617445 DHX32Q7L7V1 743 aaKnown RBP21.97■■□□□ 1.11
CCDC28A-203ENST00000617445 TEX2Q8IWB9 1127 aa21.97■■□□□ 1.11
CCDC28A-203ENST00000617445 AFAP1L1Q8TED9 768 aa21.97■■□□□ 1.11
CCDC28A-203ENST00000617445 CCDC136Q96JN2 1154 aa21.97■■□□□ 1.11
CCDC28A-203ENST00000617445 PSTPIP2Q9H939 334 aa21.97■■□□□ 1.11
CCDC28A-203ENST00000617445 RBM28Q9NW13 759 aaKnown RBP21.97■■□□□ 1.11
CCDC28A-203ENST00000617445 GTF2IRD1Q9UHL9 959 aa21.97■■□□□ 1.11
CCDC28A-203ENST00000617445 MEIS2O14770 477 aa21.96■■□□□ 1.11
CCDC28A-203ENST00000617445 MRPS9P82933 396 aaKnown RBP21.96■■□□□ 1.11
CCDC28A-203ENST00000617445 EXOSC10Q01780 885 aaKnown RBP21.96■■□□□ 1.11
CCDC28A-203ENST00000617445 SP2Q02086 613 aa21.96■■□□□ 1.11
CCDC28A-203ENST00000617445 KIAA0753Q2KHM9 967 aa21.96■■□□□ 1.11
CCDC28A-203ENST00000617445 HSDL1Q3SXM5 330 aa21.96■■□□□ 1.11
CCDC28A-203ENST00000617445 PCNX4Q63HM2 1172 aa21.96■■□□□ 1.11
CCDC28A-203ENST00000617445 GDF6Q6KF10 455 aaPredicted RBP21.96■■□□□ 1.11
CCDC28A-203ENST00000617445 TMTC3Q6ZXV5 915 aa21.96■■□□□ 1.11
CCDC28A-203ENST00000617445 SKAP1Q86WV1 359 aa21.96■■□□□ 1.11
CCDC28A-203ENST00000617445 VWCEQ96DN2 955 aa21.96■■□□□ 1.11
CCDC28A-203ENST00000617445 LRRC2Q9BYS8 371 aa21.96■■□□□ 1.11
CCDC28A-203ENST00000617445 A0A0C4DFX4 3053 aa21.95■■□□□ 1.11
CCDC28A-203ENST00000617445 GRXCR1A8MXD5 290 aa21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 SPATA31C2B4DYI2 1134 aa21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 FIBPO43427 364 aa21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 FOSL2P15408 326 aa21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 RXRAP19793 462 aa21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 RBL2Q08999 1139 aa21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 COL9A3Q14050 684 aaPredicted RBP21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 USP17L6PQ6QN14 398 aa21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 DEFB128Q7Z7B8 93 aa21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 MICU3Q86XE3 530 aa21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 MYLIPQ8WY64 445 aa21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 SENP7Q9BQF6 1050 aa21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 HDAC6Q9UBN7 1215 aa21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 SCN5AQ14524 2016 aa21.95■■□□□ 1.1
CCDC28A-203ENST00000617445 CUL9Q8IWT3 2517 aa21.94■■□□□ 1.1
CCDC28A-203ENST00000617445 ZNF286BP0CG31 522 aa21.94■■□□□ 1.1
CCDC28A-203ENST00000617445 GRIN2CQ14957 1233 aa21.94■■□□□ 1.1
CCDC28A-203ENST00000617445 APOA5Q6Q788 366 aa21.94■■□□□ 1.1
CCDC28A-203ENST00000617445 METTL7BQ6UX53 244 aa21.94■■□□□ 1.1
CCDC28A-203ENST00000617445 NLRX1Q86UT6 975 aa21.94■■□□□ 1.1
CCDC28A-203ENST00000617445 GIMAP8Q8ND71 665 aaPredicted RBP21.94■■□□□ 1.1
CCDC28A-203ENST00000617445 MAFAQ8NHW3 353 aaPredicted RBP21.94■■□□□ 1.1
CCDC28A-203ENST00000617445 PPP1R13LQ8WUF5 828 aa21.94■■□□□ 1.1
CCDC28A-203ENST00000617445 CTAGE1Q96RT6 745 aa21.94■■□□□ 1.1
CCDC28A-203ENST00000617445 ALG1Q9BT22 464 aa21.94■■□□□ 1.1
CCDC28A-203ENST00000617445 USP26Q9BXU7 913 aa21.94■■□□□ 1.1
CCDC28A-203ENST00000617445 TANC1Q9C0D5 1861 aa21.94■■□□□ 1.1
CCDC28A-203ENST00000617445 ZBBXA8MT70 800 aa21.93■■□□□ 1.1
CCDC28A-203ENST00000617445 NOP56O00567 594 aaKnown RBP21.93■■□□□ 1.1
CCDC28A-203ENST00000617445 SELPP16109 830 aa21.93■■□□□ 1.1
CCDC28A-203ENST00000617445 PBX2P40425 430 aa21.93■■□□□ 1.1
CCDC28A-203ENST00000617445 RCAN1P53805 252 aa21.93■■□□□ 1.1
CCDC28A-203ENST00000617445 PTK7Q13308 1070 aa21.93■■□□□ 1.1
CCDC28A-203ENST00000617445 CMTR1Q8N1G2 835 aaKnown RBP21.93■■□□□ 1.1
CCDC28A-203ENST00000617445 PHOSPHO2Q8TCD6 241 aa21.93■■□□□ 1.1
CCDC28A-203ENST00000617445 CDHR1Q96JP9 859 aa21.93■■□□□ 1.1
CCDC28A-203ENST00000617445 FTOQ9C0B1 505 aaKnown RBP eCLIP21.93■■□□□ 1.1
CCDC28A-203ENST00000617445 PCDHA11Q9Y5I1 949 aa21.93■■□□□ 1.1
CCDC28A-203ENST00000617445 TET1Q8NFU7 2136 aa21.92■■□□□ 1.1
CCDC28A-203ENST00000617445 ZBTB43O43298 467 aa21.92■■□□□ 1.1
CCDC28A-203ENST00000617445 BAIAP3O94812 1187 aa21.92■■□□□ 1.1
CCDC28A-203ENST00000617445 ATP2A2P16615 1042 aaKnown RBP21.92■■□□□ 1.1
CCDC28A-203ENST00000617445 RASEFQ8IZ41 740 aa21.92■■□□□ 1.1
CCDC28A-203ENST00000617445 GPKOWQ92917 476 aaPredicted RBP eCLIP21.92■■□□□ 1.1
CCDC28A-203ENST00000617445 ZFP91Q96JP5 570 aaPredicted RBP21.92■■□□□ 1.1
CCDC28A-203ENST00000617445 C16orf70Q9BSU1 422 aa21.92■■□□□ 1.1
CCDC28A-203ENST00000617445 SLC28A3Q9HAS3 691 aa21.92■■□□□ 1.1
CCDC28A-203ENST00000617445 RTEL1Q9NZ71 1219 aa21.92■■□□□ 1.1
CCDC28A-203ENST00000617445 CDH23Q9H251 3354 aa21.92■■□□□ 1.1
CCDC28A-203ENST00000617445 H3BRB1 525 aa21.91■■□□□ 1.1
CCDC28A-203ENST00000617445 RTN1Q16799 776 aa21.91■■□□□ 1.1
CCDC28A-203ENST00000617445 LRRC8DQ7L1W4 858 aa21.91■■□□□ 1.1
CCDC28A-203ENST00000617445 CCDC82Q8N4S0 544 aa21.91■■□□□ 1.1
CCDC28A-203ENST00000617445 KCNB2Q92953 911 aa21.91■■□□□ 1.1
CCDC28A-203ENST00000617445 GPRASP2Q96D09 838 aa21.91■■□□□ 1.1
CCDC28A-203ENST00000617445 SLC9A7Q96T83 725 aa21.91■■□□□ 1.1
CCDC28A-203ENST00000617445 TUT1Q9H6E5 874 aaKnown RBP21.91■■□□□ 1.1
CCDC28A-203ENST00000617445 EHMT1Q9H9B1 1298 aa21.91■■□□□ 1.1
CCDC28A-203ENST00000617445 GBF1Q92538 1859 aa21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 SPDYE3A6NKU9 549 aa21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 hCG_1984214I3L0E3 225 aa21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 MAFGO15525 162 aa21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 CKBP12277 381 aa21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 SEMA3FQ13275 785 aa21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 ADCK5Q3MIX3 580 aa21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 CYFIP1Q7L576 1253 aa21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 HEATR3Q7Z4Q2 680 aa21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 RAB11FIP4Q86YS3 637 aa21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 ZNF713Q8N859 430 aaPredicted RBP21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 DHX38Q92620 1227 aaKnown RBP21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 GAS2L1Q99501 681 aaPredicted RBP21.9■■□□□ 1.1
CCDC28A-203ENST00000617445 SORBS3O60504 671 aa21.89■■□□□ 1.09
CCDC28A-203ENST00000617445 LGALS2P05162 132 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms