RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 ZFP91Q96JP5 570 aaPredicted RBP19.76■□□□□ 0.75
SHKBP1-212ENST00000596163 MTG1Q9BT17 334 aaPredicted RBP19.76■□□□□ 0.75
SHKBP1-212ENST00000596163 MLXIPQ9HAP2 919 aa19.76■□□□□ 0.75
SHKBP1-212ENST00000596163 VPS54Q9P1Q0 977 aa19.76■□□□□ 0.75
SHKBP1-212ENST00000596163 LRRC37A2A6NM11 1700 aa19.76■□□□□ 0.75
SHKBP1-212ENST00000596163 STK36Q9NRP7 1315 aa19.76■□□□□ 0.75
SHKBP1-212ENST00000596163 DCDC2CA8MYV0 355 aa19.75■□□□□ 0.75
SHKBP1-212ENST00000596163 ARVCFO00192 962 aa19.75■□□□□ 0.75
SHKBP1-212ENST00000596163 PTGS1P23219 599 aa19.75■□□□□ 0.75
SHKBP1-212ENST00000596163 TRIM60Q495X7 471 aa19.75■□□□□ 0.75
SHKBP1-212ENST00000596163 CELF3Q5SZQ8 465 aaKnown RBP19.75■□□□□ 0.75
SHKBP1-212ENST00000596163 JAKMIP3Q5VZ66 844 aa19.75■□□□□ 0.75
SHKBP1-212ENST00000596163 AFG1LQ8WV93 481 aa19.75■□□□□ 0.75
SHKBP1-212ENST00000596163 TOX2Q96NM4 488 aa19.75■□□□□ 0.75
SHKBP1-212ENST00000596163 KIF2CQ99661 725 aa19.75■□□□□ 0.75
SHKBP1-212ENST00000596163 SENP7Q9BQF6 1050 aa19.75■□□□□ 0.75
SHKBP1-212ENST00000596163 PDE4DIPQ5VU43 2346 aa19.75■□□□□ 0.75
SHKBP1-212ENST00000596163 ST18O60284 1047 aa19.74■□□□□ 0.75
SHKBP1-212ENST00000596163 GGPS1O95749 300 aa19.74■□□□□ 0.75
SHKBP1-212ENST00000596163 ZNF76P36508 570 aa19.74■□□□□ 0.75
SHKBP1-212ENST00000596163 SREBF1P36956 1147 aa19.74■□□□□ 0.75
SHKBP1-212ENST00000596163 TLE2Q04725 743 aa19.74■□□□□ 0.75
SHKBP1-212ENST00000596163 DGKDQ16760 1214 aa19.74■□□□□ 0.75
SHKBP1-212ENST00000596163 MYSM1Q5VVJ2 828 aa19.74■□□□□ 0.75
SHKBP1-212ENST00000596163 NECAB1Q8N987 351 aa19.74■□□□□ 0.75
SHKBP1-212ENST00000596163 PPTC7Q8NI37 304 aa19.74■□□□□ 0.75
SHKBP1-212ENST00000596163 SPATA33Q96N06 139 aa19.74■□□□□ 0.75
SHKBP1-212ENST00000596163 JADE2Q9NQC1 790 aa19.74■□□□□ 0.75
SHKBP1-212ENST00000596163 TMEM260Q9NX78 707 aa19.74■□□□□ 0.75
SHKBP1-212ENST00000596163 UBIAD1Q9Y5Z9 338 aa19.74■□□□□ 0.75
SHKBP1-212ENST00000596163 TLR3O15455 904 aaKnown RBP19.73■□□□□ 0.75
SHKBP1-212ENST00000596163 PPFIA4O75335 1185 aa19.73■□□□□ 0.75
SHKBP1-212ENST00000596163 MMP3P08254 477 aa19.73■□□□□ 0.75
SHKBP1-212ENST00000596163 UBA1P22314 1058 aaKnown RBP19.73■□□□□ 0.75
SHKBP1-212ENST00000596163 CDK7P50613 346 aa19.73■□□□□ 0.75
SHKBP1-212ENST00000596163 PURAQ00577 322 aaKnown RBP19.73■□□□□ 0.75
SHKBP1-212ENST00000596163 ITGA7Q13683 1181 aa19.73■□□□□ 0.75
SHKBP1-212ENST00000596163 ANKRD33Q7Z3H0 272 aa19.73■□□□□ 0.75
SHKBP1-212ENST00000596163 MXRA8Q9BRK3 442 aa19.73■□□□□ 0.75
SHKBP1-212ENST00000596163 SH2B1Q9NRF2 756 aaPredicted RBP19.73■□□□□ 0.75
SHKBP1-212ENST00000596163 ORC3Q9UBD5 711 aaPredicted RBP19.73■□□□□ 0.75
SHKBP1-212ENST00000596163 ZMYND8Q9ULU4 1186 aaPredicted RBP19.73■□□□□ 0.75
SHKBP1-212ENST00000596163 PCDHA4Q9UN74 947 aa19.73■□□□□ 0.75
SHKBP1-212ENST00000596163 PQBP1O60828 265 aaKnown RBP19.72■□□□□ 0.75
SHKBP1-212ENST00000596163 ARHGAP4P98171 946 aa19.72■□□□□ 0.75
SHKBP1-212ENST00000596163 SP2Q02086 613 aa19.72■□□□□ 0.75
SHKBP1-212ENST00000596163 MTMR1Q13613 665 aa19.72■□□□□ 0.75
SHKBP1-212ENST00000596163 PGBD1Q96JS3 809 aa19.72■□□□□ 0.75
SHKBP1-212ENST00000596163 NOP56O00567 594 aaKnown RBP19.71■□□□□ 0.75
SHKBP1-212ENST00000596163 LARGE1O95461 756 aa19.71■□□□□ 0.75
SHKBP1-212ENST00000596163 CTDNEP1O95476 244 aa19.71■□□□□ 0.75
SHKBP1-212ENST00000596163 CYP3A4P08684 503 aa19.71■□□□□ 0.75
SHKBP1-212ENST00000596163 CLTBP09497 229 aa19.71■□□□□ 0.75
SHKBP1-212ENST00000596163 ITGB5P18084 799 aa19.71■□□□□ 0.75
SHKBP1-212ENST00000596163 CEP55Q53EZ4 464 aa19.71■□□□□ 0.75
SHKBP1-212ENST00000596163 METTL7BQ6UX53 244 aa19.71■□□□□ 0.75
SHKBP1-212ENST00000596163 BLIDQ8IZY5 108 aa19.71■□□□□ 0.75
SHKBP1-212ENST00000596163 SLC43A3Q8NBI5 491 aa19.71■□□□□ 0.75
SHKBP1-212ENST00000596163 TBC1D32Q96NH3 1257 aa19.71■□□□□ 0.75
SHKBP1-212ENST00000596163 BACH2Q9BYV9 841 aa19.71■□□□□ 0.75
SHKBP1-212ENST00000596163 MKI67P46013 3256 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-212ENST00000596163 SYN1P17600 705 aa19.7■□□□□ 0.74
SHKBP1-212ENST00000596163 SEMA3FQ13275 785 aa19.7■□□□□ 0.74
SHKBP1-212ENST00000596163 CYFIP1Q7L576 1253 aa19.7■□□□□ 0.74
SHKBP1-212ENST00000596163 NIPA1Q7RTP0 329 aa19.7■□□□□ 0.74
SHKBP1-212ENST00000596163 DAGLBQ8NCG7 672 aa19.7■□□□□ 0.74
SHKBP1-212ENST00000596163 LBHD1Q9BQE6 289 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-212ENST00000596163 LLPHQ9BRT6 129 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-212ENST00000596163 ALG1Q9BT22 464 aa19.7■□□□□ 0.74
SHKBP1-212ENST00000596163 KATNAL1Q9BW62 490 aa19.7■□□□□ 0.74
SHKBP1-212ENST00000596163 PRDM5Q9NQX1 630 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-212ENST00000596163 TMEM39AQ9NV64 488 aa19.7■□□□□ 0.74
SHKBP1-212ENST00000596163 MCM2P49736 904 aa19.69■□□□□ 0.74
SHKBP1-212ENST00000596163 PSMC6P62333 389 aa19.69■□□□□ 0.74
SHKBP1-212ENST00000596163 PTPN11Q06124 597 aaPredicted RBP19.69■□□□□ 0.74
SHKBP1-212ENST00000596163 HSDL1Q3SXM5 330 aa19.69■□□□□ 0.74
SHKBP1-212ENST00000596163 NSUN7Q8NE18 718 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-212ENST00000596163 MEIS1O00470 390 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 SORBS3O60504 671 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 SUPT20HL2P0C7V6 817 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 HOXD8P13378 290 aaPredicted RBP19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 USP11P51784 963 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 FAAP100Q0VG06 881 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 TRIM29Q14134 588 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 NBPF20Q3BBV1 942 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 NFRKBQ6P4R8 1299 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 CCDC83Q8IWF9 413 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 RASGRP4Q8TDF6 673 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 AIFM3Q96NN9 605 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 SDF4Q9BRK5 362 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 BRMS1Q9HCU9 246 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 PDLIM7Q9NR12 457 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 KCNH7Q9NS40 1196 aa19.68■□□□□ 0.74
SHKBP1-212ENST00000596163 KIAA0355O15063 1070 aa19.67■□□□□ 0.74
SHKBP1-212ENST00000596163 KCNA2P16389 499 aa19.67■□□□□ 0.74
SHKBP1-212ENST00000596163 SETQ01105 290 aaPredicted RBP19.67■□□□□ 0.74
SHKBP1-212ENST00000596163 FAM47CQ5HY64 1035 aa19.67■□□□□ 0.74
SHKBP1-212ENST00000596163 KRT25Q7Z3Z0 450 aa19.67■□□□□ 0.74
SHKBP1-212ENST00000596163 PLA2G4DQ86XP0 818 aa19.67■□□□□ 0.74
SHKBP1-212ENST00000596163 FAM126BQ8IXS8 530 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms