RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 PLA2G4BP0C869 781 aa20.6■□□□□ 0.89
PRPF40B-208ENST00000548436 HOXA7P31268 230 aaPredicted RBP20.6■□□□□ 0.89
PRPF40B-208ENST00000548436 IKQ13123 557 aaPredicted RBP20.6■□□□□ 0.89
PRPF40B-208ENST00000548436 MOXD1Q6UVY6 613 aa20.6■□□□□ 0.89
PRPF40B-208ENST00000548436 MYOCDQ8IZQ8 938 aa20.6■□□□□ 0.89
PRPF40B-208ENST00000548436 ETNPPLQ8TBG4 499 aa20.6■□□□□ 0.89
PRPF40B-208ENST00000548436 RABGGTAQ92696 567 aa20.6■□□□□ 0.89
PRPF40B-208ENST00000548436 NHEJ1Q9H9Q4 299 aaPredicted RBP20.6■□□□□ 0.89
PRPF40B-208ENST00000548436 PUF60Q9UHX1 559 aaKnown RBP20.6■□□□□ 0.89
PRPF40B-208ENST00000548436 FHOD1Q9Y613 1164 aa20.6■□□□□ 0.89
PRPF40B-208ENST00000548436 NPHP3-ACAD11A0A0J9YXS1 232 aa20.59■□□□□ 0.89
PRPF40B-208ENST00000548436 ZRANB2O95218 330 aaKnown RBP eCLIP20.59■□□□□ 0.89
PRPF40B-208ENST00000548436 FGFR1OPO95684 399 aaKnown RBP20.59■□□□□ 0.89
PRPF40B-208ENST00000548436 BMP3P12645 472 aa20.59■□□□□ 0.89
PRPF40B-208ENST00000548436 MAN2A1Q16706 1144 aa20.59■□□□□ 0.89
PRPF40B-208ENST00000548436 CC2D2BQ6DHV5 1058 aa20.59■□□□□ 0.89
PRPF40B-208ENST00000548436 SLFN12Q8IYM2 578 aa20.59■□□□□ 0.89
PRPF40B-208ENST00000548436 KRT222Q8N1A0 295 aa20.59■□□□□ 0.89
PRPF40B-208ENST00000548436 ABCB11O95342 1321 aa20.59■□□□□ 0.89
PRPF40B-208ENST00000548436 OPLAHO14841 1288 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 EPHB6O15197 1021 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 C21orf2O43822 256 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 ERCC3P19447 782 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 CHMP4BP1P59074 171 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 SPIRE1Q08AE8 756 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 TUBB2AQ13885 445 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 ZCWPW2Q504Y3 356 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 PRR16Q569H4 304 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 FAM26FQ5R3K3 315 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 LENG9Q96B70 501 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 TUBB2BQ9BVA1 445 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 HAUS4Q9H6D7 363 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 ZNHIT6Q9NWK9 470 aaKnown RBP20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 TBC1D7Q9P0N9 293 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 PCDHA2Q9Y5H9 948 aa20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 COL2A1P02458 1487 aaPredicted RBP20.58■□□□□ 0.89
PRPF40B-208ENST00000548436 MMP14P50281 582 aa20.58■□□□□ 0.88
PRPF40B-208ENST00000548436 CACNB1Q02641 598 aaPredicted RBP20.58■□□□□ 0.88
PRPF40B-208ENST00000548436 BMS1Q14692 1282 aaKnown RBP20.58■□□□□ 0.88
PRPF40B-208ENST00000548436 FOXR2Q6PJQ5 311 aa20.58■□□□□ 0.88
PRPF40B-208ENST00000548436 TMCO3Q6UWJ1 677 aa20.58■□□□□ 0.88
PRPF40B-208ENST00000548436 BTNL9Q6UXG8 535 aa20.58■□□□□ 0.88
PRPF40B-208ENST00000548436 SPICE1Q8N0Z3 855 aa20.58■□□□□ 0.88
PRPF40B-208ENST00000548436 CEP112Q8N8E3 955 aa20.58■□□□□ 0.88
PRPF40B-208ENST00000548436 TSG101Q99816 390 aa20.58■□□□□ 0.88
PRPF40B-208ENST00000548436 PARD6BQ9BYG5 372 aa20.58■□□□□ 0.88
PRPF40B-208ENST00000548436 BMP2KQ9NSY1 1161 aaPredicted RBP20.58■□□□□ 0.88
PRPF40B-208ENST00000548436 FAM86B1E9PN63 330 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 SEC31AO94979 1220 aaKnown RBP20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 FAM86B2P0C5J1 330 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 CYP11B2P19099 503 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 SLC15A2Q16348 729 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 Q4G0T1 1027 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 GPBP1Q86WP2 473 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 POTEFA5A3E0 1075 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 RCCD1A6NED2 376 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 TCP10L2B9ZVM9 353 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 POTEIP0CG38 1075 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 PNMA6AP0CW24 399 aaPredicted RBP20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 CYLC1P35663 651 aaPredicted RBP20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 SREBF1P36956 1147 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 SLC12A3P55017 1021 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 KRT83P78385 493 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 AMPD2Q01433 879 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 CCDC122Q5T0U0 273 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 POTEGQ6S5H5 508 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 POTEEQ6S8J3 1075 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 CCDC170Q8IYT3 715 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 SUPT20HQ8NEM7 779 aa20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 FAM207AQ9NSI2 230 aaPredicted RBP20.57■□□□□ 0.88
PRPF40B-208ENST00000548436 SPDYE3A6NKU9 549 aa20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 EIF3CLB5ME19 914 aaKnown RBP20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 SLC26A4O43511 780 aa20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 HOXA13P31271 388 aaPredicted RBP20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 ECE1P42892 770 aa20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 CDK17Q00537 523 aa20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 RAD51AP2Q09MP3 1159 aa20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 ARSHQ5FYA8 562 aa20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 KIAA1755Q5JYT7 1200 aa20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 ZNF662Q6ZS27 426 aa20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 CATSPER3Q86XQ3 398 aa20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 CCDC65Q8IXS2 484 aa20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 EIF3CQ99613 913 aaKnown RBP20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 PRR12Q9ULL5 1215 aa20.56■□□□□ 0.88
PRPF40B-208ENST00000548436 PLEKP08567 350 aaPredicted RBP20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 MCTP2Q6DN12 878 aa20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 IQCDQ96DY2 449 aa20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 LACRTQ9GZZ8 138 aa20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 PLAGL2Q9UPG8 496 aa20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 CLRN2A0PK11 232 aa20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 PSMD14O00487 310 aa20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 TBX3O15119 743 aa20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 FOSP01100 380 aaPredicted RBP20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 HNRNPH3P31942 346 aaKnown RBP20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 PSMC6P62333 389 aa20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 FKBP3Q00688 224 aaKnown RBP20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 SF3B2Q13435 895 aaKnown RBP20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 NCAPH2Q6IBW4 605 aa20.55■□□□□ 0.88
PRPF40B-208ENST00000548436 KIAA1328Q86T90 577 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms