RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 NR3C2P08235 984 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 PFKMP08237 780 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 CYP21A2P08686 494 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 ATP2A2P16615 1042 aaKnown RBP9.85□□□□□ -0.83
USP28-215ENST00000545608 IGFBP4P22692 258 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 HSD17B4P51659 736 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 CCDC85BQ15834 202 aaPredicted RBP9.85□□□□□ -0.83
USP28-215ENST00000545608 RETREG2Q8NC44 543 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 PTCD2Q8WV60 388 aaKnown RBP9.85□□□□□ -0.83
USP28-215ENST00000545608 CTAGE1Q96RT6 745 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 AMNQ9BXJ7 453 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 SENP2Q9HC62 589 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 PXMP2Q9NR77 195 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 PCDHA11Q9Y5I1 949 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 TAF6LQ9Y6J9 622 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 ZBTB5O15062 677 aa9.84□□□□□ -0.83
USP28-215ENST00000545608 CASTP20810 708 aaKnown RBP9.84□□□□□ -0.83
USP28-215ENST00000545608 CHMLP26374 656 aa9.84□□□□□ -0.83
USP28-215ENST00000545608 GHRHRQ02643 423 aa9.84□□□□□ -0.83
USP28-215ENST00000545608 BFSP2Q13515 415 aa9.84□□□□□ -0.83
USP28-215ENST00000545608 GPNMBQ14956 572 aa9.84□□□□□ -0.83
USP28-215ENST00000545608 PTGISQ16647 500 aa9.84□□□□□ -0.83
USP28-215ENST00000545608 AMHR2Q16671 573 aa9.84□□□□□ -0.83
USP28-215ENST00000545608 GDF6Q6KF10 455 aaPredicted RBP9.84□□□□□ -0.83
USP28-215ENST00000545608 SESTD1Q86VW0 696 aa9.84□□□□□ -0.83
USP28-215ENST00000545608 PDCD2LQ9BRP1 358 aa9.84□□□□□ -0.83
USP28-215ENST00000545608 FTOQ9C0B1 505 aaKnown RBP eCLIP9.84□□□□□ -0.83
USP28-215ENST00000545608 NOD1Q9Y239 953 aa9.84□□□□□ -0.83
USP28-215ENST00000545608 PCDHA1Q9Y5I3 950 aa9.84□□□□□ -0.83
USP28-215ENST00000545608 SCN10AQ9Y5Y9 1956 aa9.84□□□□□ -0.83
USP28-215ENST00000545608 RFXAPO00287 272 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 IFIT3O14879 490 aaKnown RBP9.83□□□□□ -0.84
USP28-215ENST00000545608 CYTH3O43739 400 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 RGS20O76081 388 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 MYCLP12524 364 aaPredicted RBP9.83□□□□□ -0.84
USP28-215ENST00000545608 ACTN1P12814 892 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 HOXA13P31271 388 aaPredicted RBP9.83□□□□□ -0.84
USP28-215ENST00000545608 RFC2P35250 354 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 PSEN2P49810 448 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 IRX6P78412 446 aaPredicted RBP9.83□□□□□ -0.84
USP28-215ENST00000545608 TRDNQ13061 729 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 LAMC2Q13753 1193 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 GRM4Q14833 912 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 DGKDQ16760 1214 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 TMEM67Q5HYA8 995 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 TJAP1Q5JTD0 557 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 PPP2R2DQ66LE6 453 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 STOX1Q6ZVD7 989 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 VSIG10LQ86VR7 867 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 HOMER1Q86YM7 354 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 DHX37Q8IY37 1157 aaKnown RBP9.83□□□□□ -0.84
USP28-215ENST00000545608 IL31RAQ8NI17 732 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 RUFY2Q8WXA3 655 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 DHX38Q92620 1227 aaKnown RBP9.83□□□□□ -0.84
USP28-215ENST00000545608 SYMPKQ92797 1274 aaKnown RBP9.83□□□□□ -0.84
USP28-215ENST00000545608 EMID1Q96A84 441 aaPredicted RBP9.83□□□□□ -0.84
USP28-215ENST00000545608 PIGSQ96S52 555 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 ALG1Q9BT22 464 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 RIOX1Q9H6W3 641 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 HDAC6Q9UBN7 1215 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 MRVI1Q9Y6F6 885 aa9.83□□□□□ -0.84
USP28-215ENST00000545608 MYO9BQ13459 2157 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 LAMA4Q16363 1823 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 E7EWF7 191 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 HAS3O00219 553 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 SORBS3O60504 671 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 ARHGEF15O94989 841 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 CA3P07451 260 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 ZNF286BP0CG31 522 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 ZNF200P98182 395 aaPredicted RBP9.82□□□□□ -0.84
USP28-215ENST00000545608 SP2Q02086 613 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 TROAPQ12815 778 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 PGM5Q15124 567 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 MYSM1Q5VVJ2 828 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 SAMD3Q8N6K7 520 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 CAGE1Q8TC20 777 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 PHOSPHO2Q8TCD6 241 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 GPKOWQ92917 476 aaPredicted RBP eCLIP9.82□□□□□ -0.84
USP28-215ENST00000545608 SLC9A7Q96T83 725 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 CERS4Q9HA82 394 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 MAP3K20Q9NYL2 800 aaKnown RBP9.82□□□□□ -0.84
USP28-215ENST00000545608 GTF2IRD1Q9UHL9 959 aa9.82□□□□□ -0.84
USP28-215ENST00000545608 EPOPA6NHQ4 379 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 GCOM1H8Y6P7 765 aaPredicted RBP9.81□□□□□ -0.84
USP28-215ENST00000545608 SGSM2O43147 1006 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 NBNO60934 754 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 F2P00734 622 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 POLR2MP0CAP2 368 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 CKBP12277 381 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 HOXD8P13378 290 aaPredicted RBP9.81□□□□□ -0.84
USP28-215ENST00000545608 SELPP16109 830 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 ANTXR2P58335 489 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 RBL2Q08999 1139 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 PTGDRQ13258 359 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 WTAPQ15007 396 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 KIAA0753Q2KHM9 967 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 TCTN1Q2MV58 587 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 TRIM71Q2Q1W2 868 aaKnown RBP9.81□□□□□ -0.84
USP28-215ENST00000545608 HSDL1Q3SXM5 330 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 CELF3Q5SZQ8 465 aaKnown RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms