RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 SLC9A7Q96T83 725 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 CCDC69A6NI79 296 aa15.02■□□□□ -0
CPSF1-204ENST00000529288 PPFIA4O75335 1185 aa15.02■□□□□ -0
CPSF1-204ENST00000529288 CKBP12277 381 aa15.02■□□□□ -0
CPSF1-204ENST00000529288 RXRAP19793 462 aa15.02■□□□□ -0
CPSF1-204ENST00000529288 UBA1P22314 1058 aaKnown RBP15.02■□□□□ -0
CPSF1-204ENST00000529288 KIF5BP33176 963 aa15.02■□□□□ -0
CPSF1-204ENST00000529288 GHRHRQ02643 423 aa15.02■□□□□ -0
CPSF1-204ENST00000529288 SKIV2LQ15477 1246 aaKnown RBP15.02■□□□□ -0
CPSF1-204ENST00000529288 SESTD1Q86VW0 696 aa15.02■□□□□ -0
CPSF1-204ENST00000529288 HERC6Q8IVU3 1022 aa15.02■□□□□ -0
CPSF1-204ENST00000529288 SMARCC2Q8TAQ2 1214 aa15.02■□□□□ -0
CPSF1-204ENST00000529288 ARNTL2Q8WYA1 636 aa15.02■□□□□ -0
CPSF1-204ENST00000529288 CUL5Q93034 780 aa15.02■□□□□ -0
CPSF1-204ENST00000529288 ZBED2Q9BTP6 218 aa15.02■□□□□ -0
CPSF1-204ENST00000529288 LY9Q9HBG7 655 aa15.02■□□□□ -0
CPSF1-204ENST00000529288 SEC63Q9UGP8 760 aaKnown RBP15.02■□□□□ -0
CPSF1-204ENST00000529288 NOP56O00567 594 aaKnown RBP15.01□□□□□ -0.01
CPSF1-204ENST00000529288 F2P00734 622 aa15.01□□□□□ -0.01
CPSF1-204ENST00000529288 SP4Q02446 784 aa15.01□□□□□ -0.01
CPSF1-204ENST00000529288 PTK7Q13308 1070 aa15.01□□□□□ -0.01
CPSF1-204ENST00000529288 GNPTABQ3T906 1256 aa15.01□□□□□ -0.01
CPSF1-204ENST00000529288 TJAP1Q5JTD0 557 aa15.01□□□□□ -0.01
CPSF1-204ENST00000529288 TMCO2Q7Z6W1 182 aaPredicted RBP15.01□□□□□ -0.01
CPSF1-204ENST00000529288 CMTR1Q8N1G2 835 aaKnown RBP15.01□□□□□ -0.01
CPSF1-204ENST00000529288 PHOSPHO2Q8TCD6 241 aa15.01□□□□□ -0.01
CPSF1-204ENST00000529288 CTAGE1Q96RT6 745 aa15.01□□□□□ -0.01
CPSF1-204ENST00000529288 BCAS3Q9H6U6 928 aa15.01□□□□□ -0.01
CPSF1-204ENST00000529288 CDH23Q9H251 3354 aa15.01□□□□□ -0.01
CPSF1-204ENST00000529288 HAS3O00219 553 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 SLC27A2O14975 620 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 TLL1O43897 1013 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 DDAH1O94760 285 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 PLEKHA8P1O95397 391 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 TGFB3P10600 412 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 MCM5P33992 734 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 ZNF618Q5T7W0 954 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 UTP14CQ5TAP6 766 aaKnown RBP15□□□□□ -0.01
CPSF1-204ENST00000529288 FAM117BQ6P1L5 589 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 USP17L6PQ6QN14 398 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 CYFIP1Q7L576 1253 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 CCDC82Q8N4S0 544 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 IL27Q8NEV9 243 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 WNT8BQ93098 351 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 LRRC2Q9BYS8 371 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 LSG1Q9H089 658 aaKnown RBP15□□□□□ -0.01
CPSF1-204ENST00000529288 TSPYL2Q9H2G4 693 aaPredicted RBP15□□□□□ -0.01
CPSF1-204ENST00000529288 ANO2Q9NQ90 1003 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 THEGQ9P2T0 379 aa15□□□□□ -0.01
CPSF1-204ENST00000529288 hCG_1642624A0A1W2PR95 340 aa14.99□□□□□ -0.01
CPSF1-204ENST00000529288 C17orf102A2RUQ5 167 aa14.99□□□□□ -0.01
CPSF1-204ENST00000529288 SH2B2O14492 632 aaPredicted RBP14.99□□□□□ -0.01
CPSF1-204ENST00000529288 GTPBP6O43824 516 aaPredicted RBP14.99□□□□□ -0.01
CPSF1-204ENST00000529288 NBNO60934 754 aa14.99□□□□□ -0.01
CPSF1-204ENST00000529288 BAIAP3O94812 1187 aa14.99□□□□□ -0.01
CPSF1-204ENST00000529288 THPOP40225 353 aa14.99□□□□□ -0.01
CPSF1-204ENST00000529288 GNAQP50148 359 aa14.99□□□□□ -0.01
CPSF1-204ENST00000529288 WDR5P61964 334 aaKnown RBP14.99□□□□□ -0.01
CPSF1-204ENST00000529288 MRPS9P82933 396 aaKnown RBP14.99□□□□□ -0.01
CPSF1-204ENST00000529288 HIC1Q14526 733 aa14.99□□□□□ -0.01
CPSF1-204ENST00000529288 GPNMBQ14956 572 aa14.99□□□□□ -0.01
CPSF1-204ENST00000529288 CREB3L3Q68CJ9 461 aa14.99□□□□□ -0.01
CPSF1-204ENST00000529288 CNKSR3Q6P9H4 555 aa14.99□□□□□ -0.01
CPSF1-204ENST00000529288 SKAP1Q86WV1 359 aa14.99□□□□□ -0.01
CPSF1-204ENST00000529288 SRBD1Q8N5C6 995 aaKnown RBP14.99□□□□□ -0.01
CPSF1-204ENST00000529288 LZTS2Q9BRK4 669 aa14.99□□□□□ -0.01
CPSF1-204ENST00000529288 ESYT1Q9BSJ8 1104 aa14.99□□□□□ -0.01
CPSF1-204ENST00000529288 SCN10AQ9Y5Y9 1956 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 PRUNE2Q8WUY3 3088 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 H3BRB1 525 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 ARHGEF15O94989 841 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 PARNO95453 639 aaKnown RBP14.98□□□□□ -0.01
CPSF1-204ENST00000529288 DEFB103AP81534 67 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 TAP1Q03518 808 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 IKBKEQ14164 716 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 NEDD9Q14511 834 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 TCTN1Q2MV58 587 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 TMTC2Q8N394 836 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 ATP6V0A1Q93050 837 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 TMEM87BQ96K49 555 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 C16orf70Q9BSU1 422 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 SPZ1Q9BXG8 430 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 TUT1Q9H6E5 874 aaKnown RBP14.98□□□□□ -0.01
CPSF1-204ENST00000529288 SLC12A7Q9Y666 1083 aa14.98□□□□□ -0.01
CPSF1-204ENST00000529288 EPOPA6NHQ4 379 aa14.97□□□□□ -0.01
CPSF1-204ENST00000529288 SPATA31C2B4DYI2 1134 aa14.97□□□□□ -0.01
CPSF1-204ENST00000529288 FIBPO43427 364 aa14.97□□□□□ -0.01
CPSF1-204ENST00000529288 LGALS2P05162 132 aa14.97□□□□□ -0.01
CPSF1-204ENST00000529288 SMIM10L2AP0DMW4 78 aa14.97□□□□□ -0.01
CPSF1-204ENST00000529288 SMIM10L2BP0DMW5 78 aa14.97□□□□□ -0.01
CPSF1-204ENST00000529288 MRPS5P82675 430 aaKnown RBP14.97□□□□□ -0.01
CPSF1-204ENST00000529288 COL9A3Q14050 684 aaPredicted RBP14.97□□□□□ -0.01
CPSF1-204ENST00000529288 TRIM71Q2Q1W2 868 aaKnown RBP14.97□□□□□ -0.01
CPSF1-204ENST00000529288 KRT40Q6A162 431 aa14.97□□□□□ -0.01
CPSF1-204ENST00000529288 SYNE3Q6ZMZ3 975 aa14.97□□□□□ -0.01
CPSF1-204ENST00000529288 NLRX1Q86UT6 975 aa14.97□□□□□ -0.01
CPSF1-204ENST00000529288 ATXN2LQ8WWM7 1075 aaKnown RBP14.97□□□□□ -0.01
CPSF1-204ENST00000529288 ASB2Q96Q27 587 aa14.97□□□□□ -0.01
CPSF1-204ENST00000529288 MAP3K14Q99558 947 aa14.97□□□□□ -0.01
CPSF1-204ENST00000529288 PSTPIP2Q9H939 334 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms