RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 TTC9Q92623 222 aa6.66□□□□□ -1.34
PTPN4-210ENST00000485247 FBXL18Q96ME1 805 aa6.66□□□□□ -1.34
PTPN4-210ENST00000485247 OSBPL5Q9H0X9 879 aaPredicted RBP6.66□□□□□ -1.34
PTPN4-210ENST00000485247 SLC28A3Q9HAS3 691 aa6.66□□□□□ -1.34
PTPN4-210ENST00000485247 DDX4Q9NQI0 724 aaKnown RBP6.66□□□□□ -1.34
PTPN4-210ENST00000485247 TMOD4Q9NZQ9 345 aa6.66□□□□□ -1.34
PTPN4-210ENST00000485247 SLC15A5A6NIM6 579 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 GLRX3O76003 335 aaKnown RBP6.65□□□□□ -1.34
PTPN4-210ENST00000485247 PDE8BO95263 885 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 ACRP10323 421 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 HOXA7P31268 230 aaPredicted RBP6.65□□□□□ -1.34
PTPN4-210ENST00000485247 CAP2P40123 477 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 RRP1BQ14684 758 aaKnown RBP6.65□□□□□ -1.34
PTPN4-210ENST00000485247 RAB30Q15771 203 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 TMEM240Q5SV17 173 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 PHLDB3Q6NSJ2 640 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 C16orf59Q7L2K0 433 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 VGLL2Q8N8G2 317 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 OR13H1Q8NG92 308 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 HELQQ8TDG4 1101 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 PLD4Q96BZ4 506 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 NACC1Q96RE7 527 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 AS3MTQ9HBK9 375 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 CD320Q9NPF0 282 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 TPSG1Q9NRR2 321 aa6.65□□□□□ -1.34
PTPN4-210ENST00000485247 YBX2Q9Y2T7 364 aaKnown RBP6.65□□□□□ -1.34
PTPN4-210ENST00000485247 F6X3S4 739 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 SEPT4O43236 478 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 TIMP1P01033 207 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 HOXC6P09630 235 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 IFIT1P09914 478 aaKnown RBP6.64□□□□□ -1.35
PTPN4-210ENST00000485247 CSF2RAP15509 400 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 ARID4AP29374 1257 aaPredicted RBP6.64□□□□□ -1.35
PTPN4-210ENST00000485247 BACE1P56817 501 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 RAC1P63000 192 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 CCNA1P78396 465 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 CALD1Q05682 793 aaKnown RBP6.64□□□□□ -1.35
PTPN4-210ENST00000485247 FAAP100Q0VG06 881 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 MBTPS1Q14703 1052 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 FAM47AQ5JRC9 791 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 PRAMEF19Q5SWL8 479 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 RASIP1Q5U651 963 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 ZNF365Q70YC5 407 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 DPP9Q86TI2 863 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 GTF3C2Q8WUA4 911 aaPredicted RBP6.64□□□□□ -1.35
PTPN4-210ENST00000485247 TSR2Q969E8 191 aaKnown RBP6.64□□□□□ -1.35
PTPN4-210ENST00000485247 FAM13BQ9NYF5 915 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 IVNS1ABPQ9Y6Y0 642 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 RFX7Q2KHR2 1363 aa6.64□□□□□ -1.35
PTPN4-210ENST00000485247 XIRP2A4UGR9 3374 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 A0A1W2PQ45 241 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-210ENST00000485247 A0A1W2PQY0 241 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 LRRC37A2A6NM11 1700 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 DCDC2CA8MYV0 355 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 GRM8O00222 908 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 RFXAPO00287 272 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 DEAF1O75398 565 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-210ENST00000485247 CNMDO75829 334 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 PGK1P00558 417 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 IGHA2P01877 340 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 BTDP43251 543 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 RABGGTBP53611 331 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 PPIGQ13427 754 aaKnown RBP eCLIP6.63□□□□□ -1.351e-6■■□□□ 13.7
PTPN4-210ENST00000485247 MTMR3Q13615 1198 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 GRB14Q14449 540 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 PUM3Q15397 648 aaKnown RBP6.63□□□□□ -1.35
PTPN4-210ENST00000485247 RSPO4Q2I0M5 234 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-210ENST00000485247 TWISTNBQ3B726 338 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-210ENST00000485247 BEND3Q5T5X7 828 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 KRT40Q6A162 431 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 MFSD5Q6N075 450 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 CCDC174Q6PII3 467 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 WFDC8Q8IUA0 241 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 KLHDC4Q8TBB5 520 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 LENG1Q96BZ8 264 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-210ENST00000485247 SUCLG2Q96I99 432 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 WDR18Q9BV38 432 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 C9orf78Q9NZ63 289 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-210ENST00000485247 TMEM63CQ9P1W3 806 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 COG5Q9UP83 839 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 MTCH2Q9Y6C9 303 aa6.63□□□□□ -1.35
PTPN4-210ENST00000485247 GAKO14976 1311 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 KIF16BQ96L93 1317 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 C9orf172C9J069 976 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 C19orf81C9J6K1 198 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 GHRHP01286 108 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 CYP2E1P05181 493 aaPredicted RBP6.62□□□□□ -1.35
PTPN4-210ENST00000485247 SLC5A1P13866 664 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 MYOGP15173 224 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 FGFR2P21802 821 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 MPSTP25325 297 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 JAG1P78504 1218 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 WDR43Q15061 677 aaKnown RBP eCLIP6.62□□□□□ -1.35
PTPN4-210ENST00000485247 SHROOM1Q2M3G4 852 aaPredicted RBP6.62□□□□□ -1.35
PTPN4-210ENST00000485247 NKAPLQ5M9Q1 402 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 PSRC1Q6PGN9 363 aaPredicted RBP6.62□□□□□ -1.35
PTPN4-210ENST00000485247 ADAMTSL4Q6UY14 1074 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 ANKRD33Q7Z3H0 272 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 FBXO11Q86XK2 927 aa6.62□□□□□ -1.35
PTPN4-210ENST00000485247 DZIP1Q86YF9 867 aaKnown RBP6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms