RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 BCL9LQ86UU0 1499 aa11.73□□□□□ -0.53
TCOF1-204ENST00000427724 DENND3A2RUS2 1198 aa11.73□□□□□ -0.53
TCOF1-204ENST00000427724 ONECUT3O60422 494 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-204ENST00000427724 PLEKHA8P1O95397 391 aa11.73□□□□□ -0.53
TCOF1-204ENST00000427724 OR52Z1P0C646 297 aa11.73□□□□□ -0.53
TCOF1-204ENST00000427724 KRT5P13647 590 aa11.73□□□□□ -0.53
TCOF1-204ENST00000427724 GPIHBP1Q8IV16 184 aa11.73□□□□□ -0.53
TCOF1-204ENST00000427724 NOSTRINQ8IVI9 506 aa11.73□□□□□ -0.53
TCOF1-204ENST00000427724 MMS19Q96T76 1030 aa11.73□□□□□ -0.53
TCOF1-204ENST00000427724 SLITRK6Q9H5Y7 841 aa11.73□□□□□ -0.53
TCOF1-204ENST00000427724 GJC1P36383 396 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 GCLCP48506 637 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-204ENST00000427724 NEDD9Q14511 834 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 LONRF3Q496Y0 759 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 TWF2Q6IBS0 349 aaKnown RBP11.72□□□□□ -0.53
TCOF1-204ENST00000427724 RNF180Q86T96 592 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 FAM178BQ8IXR5 827 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 TAF4BQ92750 862 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 WDR11Q9BZH6 1224 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 ATP11BQ9Y2G3 1177 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 STK24Q9Y6E0 443 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 ZMYM6O95789 1325 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 DDTLA6NHG4 134 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-204ENST00000427724 MAP2K1Q02750 393 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-204ENST00000427724 UBXN1Q04323 297 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 TBC1D10CQ8IV04 446 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 KIAA1024Q9UPX6 916 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 CTNND2Q9UQB3 1225 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 MEIS1O00470 390 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 PSAPP07602 524 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 SPECC1LQ69YQ0 1117 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 PLEKHH3Q7Z736 793 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 CAPZA3Q96KX2 299 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 VPS33BQ9H267 617 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 BLZF1Q9H2G9 400 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 NR2E3Q9Y5X4 410 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 CLCN6P51797 869 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 MAP9Q49MG5 647 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 MTMR4Q9NYA4 1195 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 PCDHB13Q9Y5F0 798 aa11.72□□□□□ -0.53
TCOF1-204ENST00000427724 K7ENM7 598 aa11.71□□□□□ -0.53
TCOF1-204ENST00000427724 DMP1Q13316 513 aaPredicted RBP11.71□□□□□ -0.53
TCOF1-204ENST00000427724 DNAJC21Q5F1R6 531 aaKnown RBP11.71□□□□□ -0.53
TCOF1-204ENST00000427724 IQCEQ6IPM2 695 aa11.71□□□□□ -0.53
TCOF1-204ENST00000427724 CCDC127Q96BQ5 260 aa11.71□□□□□ -0.53
TCOF1-204ENST00000427724 RNF26Q9BY78 433 aaPredicted RBP11.71□□□□□ -0.53
TCOF1-204ENST00000427724 PPP2R3BQ9Y5P8 575 aa11.71□□□□□ -0.53
TCOF1-204ENST00000427724 CETN3O15182 167 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 TBC1D8O95759 1140 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 SLC25A27O95847 323 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 EPB41P11171 864 aaKnown RBP11.71□□□□□ -0.54
TCOF1-204ENST00000427724 ELF1P32519 619 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 GYS2P54840 703 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 BACE1P56817 501 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 SP3Q02447 781 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 RAPGEF1Q13905 1077 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 CEP112Q8N8E3 955 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 PPM1EQ8WY54 764 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 KAZALD1Q96I82 304 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 PPP2R2CQ9Y2T4 447 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 ABCB11O95342 1321 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 SYNRGQ9UMZ2 1314 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 HNRNPDLO14979 420 aaKnown RBP11.71□□□□□ -0.54
TCOF1-204ENST00000427724 CYP2J2P51589 502 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 GALNT17Q6IS24 598 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 SARM1Q6SZW1 724 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 GRAMD1CQ8IYS0 662 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 ENAHQ8N8S7 591 aaPredicted RBP11.71□□□□□ -0.54
TCOF1-204ENST00000427724 GTF3C2Q8WUA4 911 aaPredicted RBP11.71□□□□□ -0.54
TCOF1-204ENST00000427724 PCDHA6Q9UN73 950 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 PCDHA8Q9Y5H6 950 aa11.71□□□□□ -0.54
TCOF1-204ENST00000427724 ANKRD65E5RJM6 399 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 PGK2P07205 417 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 ODR4Q5SWX8 454 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 EXOC8Q8IYI6 725 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 MB21D1Q8N884 522 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 ANKRD7Q92527 254 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 JAKMIP2Q96AA8 810 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 TMEM51Q9NW97 253 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 RABGAP1Q9Y3P9 1069 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.7□□□□□ -0.54
TCOF1-204ENST00000427724 CCDC172P0C7W6 258 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 PTGDRQ13258 359 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 NR5A1Q13285 461 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 DGKZQ13574 1117 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 TSGA10IPQ3SY00 556 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 CNGA4Q8IV77 575 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 NACC1Q96RE7 527 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 ZCCHC17Q9NP64 241 aaKnown RBP11.7□□□□□ -0.54
TCOF1-204ENST00000427724 ZNF609O15014 1411 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 DCDC2CA8MYV0 355 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 STX10O60499 249 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 GGPS1O95749 300 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 ST3GAL1Q11201 340 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 ADGRF4Q8IZF3 695 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 FMR1NBQ8N0W7 255 aaPredicted RBP11.7□□□□□ -0.54
TCOF1-204ENST00000427724 EEF2KMTQ96G04 330 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 FUCA2Q9BTY2 467 aa11.7□□□□□ -0.54
TCOF1-204ENST00000427724 MORC2Q9Y6X9 1032 aaPredicted RBP11.7□□□□□ -0.54
TCOF1-204ENST00000427724 EBAG9O00559 213 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms