RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 BCRP11274 1271 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 LLGL2Q6P1M3 1020 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 SPATA2LQ8IUW3 424 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 STKLD1Q8NE28 680 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 GOLGA5Q8TBA6 731 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 SLC38A10Q9HBR0 1119 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 TNKSO95271 1327 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 A6NJR5 290 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 TBKBP1A7MCY6 615 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 MAPK6Q16659 721 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 C12orf50Q8NA57 414 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 SCFD2Q8WU76 684 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 SCFD1Q8WVM8 642 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 APOL5Q9BWW9 433 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 MROH8Q9H579 483 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 RASAL2Q9UJF2 1139 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 CEP170BQ9Y4F5 1589 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 TMEM265A0A087WTH1 108 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 TTLL13PA6NNM8 815 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 STARD3Q14849 445 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 DCAF4L1Q3SXM0 396 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 CREB3L3Q68CJ9 461 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 NT5DC4Q86YG4 428 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 CTAGE5O15320 804 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 IRF1P10914 325 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 IFNAR2P48551 515 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 GSE1Q14687 1217 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 SLC10A5Q5PT55 438 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 CASC4Q6P4E1 433 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 SLAIN1Q8ND83 568 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 NSUN7Q8NE18 718 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 K7ERI5 159 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 SPOPO43791 374 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 ENTPD3O75355 529 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 IRX4P78413 519 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 SNX17Q15036 470 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 SURF1Q15526 300 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 PROSER3Q2NL68 480 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 NEK8Q86SG6 692 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 ZNF512Q96ME7 567 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 TSEN34Q9BSV6 310 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 CARD14Q9BXL6 1004 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 EPC1Q9H2F5 836 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 SYNMO15061 1565 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 ZC3H4Q9UPT8 1303 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 ARHGAP31Q2M1Z3 1444 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 PLXNC1O60486 1568 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 KIF24Q5T7B8 1368 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 FAM47DPA6NHR8 397 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 DDAH1O94760 285 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 HSPA6P17066 643 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 GRIK1P39086 918 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 MGAT5BQ3V5L5 792 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 VPS54Q9P1Q0 977 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 GPR182O15218 404 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 GGPS1O95749 300 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 S100BP04271 92 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 CYP27A1Q02318 531 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 ITPK1Q13572 414 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 PRPSAP1Q14558 356 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 SRGAP1Q7Z6B7 1085 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 FIBCD1Q8N539 461 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 CHST13Q8NET6 341 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 TTLL11Q8NHH1 800 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 SMARCAD1Q9H4L7 1026 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 PRG3Q9Y2Y8 225 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 ZC3H11AO75152 810 aaKnown RBP eCLIP10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 PIGSQ96S52 555 aa10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 MTG1Q9BT17 334 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-202ENST00000381753 CLTCQ00610 1675 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 FGBP02675 491 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 ZNF568Q3ZCX4 644 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 RCSD1Q6JBY9 416 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 PRR23BQ6ZRT6 265 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 STAG1Q8WVM7 1258 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 CERS4Q9HA82 394 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 IKBKBO14920 756 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 GJB1P08034 283 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 SPAG1Q07617 926 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 HLTFQ14527 1009 aaKnown RBP eCLIP10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 KCNB1Q14721 858 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 BLIDQ8IZY5 108 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 SERPINA10Q9UK55 444 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 MAP3K1Q13233 1512 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 PPP1R2P41236 205 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 TECP42680 631 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 PREPLQ4J6C6 727 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 CEP85Q6P2H3 762 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 CCDC26Q8TAB7 109 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 MKNK1Q9BUB5 465 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 NAA15Q9BXJ9 866 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 ABCC3O15438 1527 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 H7C4K7 107 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 LRRC31Q6UY01 552 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 SLC44A5Q8NCS7 719 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 MSTO1Q9BUK6 570 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 CSRNP2Q9H175 543 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 C2orf40Q9H1Z8 148 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 FAM8A1Q9UBU6 413 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms