RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TRIP13Q15645 432 aaPredicted RBP12.47□□□□□ -0.41
USP53-201ENST00000274030 PIGBQ92521 554 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 DHTKD1Q96HY7 919 aaPredicted RBP12.47□□□□□ -0.41
USP53-201ENST00000274030 PLXNC1O60486 1568 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 ARPP19P56211 112 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 ZNF658Q5TYW1 1059 aaPredicted RBP12.46□□□□□ -0.41
USP53-201ENST00000274030 MYLK4Q86YV6 388 aaPredicted RBP12.46□□□□□ -0.41
USP53-201ENST00000274030 HDAC11Q96DB2 347 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 GCNT4Q9P109 453 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 DISP1Q96F81 1524 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 WDR46O15213 610 aaKnown RBP12.46□□□□□ -0.41
USP53-201ENST00000274030 HEXIM1O94992 359 aaKnown RBP12.46□□□□□ -0.41
USP53-201ENST00000274030 EIF2AK2P19525 551 aaKnown RBP12.46□□□□□ -0.41
USP53-201ENST00000274030 TFDP1Q14186 410 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 SUSD4Q5VX71 490 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 RAPH1Q70E73 1250 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 LAD1O00515 517 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 PLEKHA8P1O95397 391 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 SLCO1A2P46721 670 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 CCT5P48643 541 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 LRRC8CQ8TDW0 803 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 CPVLQ9H3G5 476 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 RIPOR2Q9Y4F9 1068 aa12.46□□□□□ -0.41
USP53-201ENST00000274030 PSDA5PKW4 1024 aaPredicted RBP12.46□□□□□ -0.42
USP53-201ENST00000274030 INHBAP08476 426 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 EEF1GP26641 437 aaKnown RBP12.46□□□□□ -0.42
USP53-201ENST00000274030 MARK3P27448 753 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 MRPS25P82663 173 aaKnown RBP12.46□□□□□ -0.42
USP53-201ENST00000274030 CTTNQ14247 550 aaKnown RBP12.46□□□□□ -0.42
USP53-201ENST00000274030 MAN2A1Q16706 1144 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 MAP7D3Q8IWC1 876 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 ANKRD36BP1Q96IX9 119 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 ACCSQ96QU6 501 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 EMILIN3Q9NT22 766 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.46□□□□□ -0.422e-9■■■■■ 36.4
USP53-201ENST00000274030 ATF5Q9Y2D1 282 aaPredicted RBP12.46□□□□□ -0.42
USP53-201ENST00000274030 ACTN1P12814 892 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 ARHGAP4P98171 946 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 SCARA5Q6ZMJ2 495 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 ABI1Q8IZP0 508 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 LRRC43Q8N309 656 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.46□□□□□ -0.42
USP53-201ENST00000274030 MICAL1Q8TDZ2 1067 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 POLD4Q9HCU8 107 aa12.46□□□□□ -0.42
USP53-201ENST00000274030 ESYT2A0FGR8 921 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 BPIFB4P59827 614 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 SYDE2Q5VT97 1194 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 JADE1Q6IE81 842 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 AK8Q96MA6 479 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 CALN1Q9BXU9 219 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 MIS12Q9H081 205 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 NBPF3Q9H094 633 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 CUEDC2Q9H467 287 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 TBK1Q9UHD2 729 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 BBOX1O75936 387 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 EIF4A3P38919 411 aaKnown RBP12.45□□□□□ -0.42
USP53-201ENST00000274030 SGO2Q562F6 1265 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 TCP11X2Q5H9J9 407 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 NACC1Q96RE7 527 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 RCOR1Q9UKL0 485 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 DAAM1Q9Y4D1 1078 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 ZBTB24O43167 697 aaPredicted RBP12.45□□□□□ -0.42
USP53-201ENST00000274030 SRGAP2CP0DJJ0 459 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 ATP1A3P13637 1013 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 IFNAR1P17181 557 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 RCN2Q14257 317 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 MAGEF1Q9HAY2 307 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 TRPC5Q9UL62 973 aaPredicted RBP12.45□□□□□ -0.42
USP53-201ENST00000274030 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.45□□□□□ -0.42
USP53-201ENST00000274030 ABCC12Q96J65 1359 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 NLRP7Q8WX94 980 aa12.45□□□□□ -0.42
USP53-201ENST00000274030 INTS9Q9NV88 658 aaKnown RBP12.45□□□□□ -0.42
USP53-201ENST00000274030 PLA2G4BP0C869 781 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 PDE1CQ14123 709 aaPredicted RBP12.44□□□□□ -0.42
USP53-201ENST00000274030 TRMT2AQ8IZ69 625 aaKnown RBP12.44□□□□□ -0.42
USP53-201ENST00000274030 WDR11Q9BZH6 1224 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 KDM5AP29375 1690 aaKnown RBP12.44□□□□□ -0.42
USP53-201ENST00000274030 CASP2P42575 452 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 HLFQ16534 295 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 CDC37Q16543 378 aaPredicted RBP12.44□□□□□ -0.42
USP53-201ENST00000274030 SYNE4Q8N205 404 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 RYBPQ8N488 228 aaPredicted RBP12.44□□□□□ -0.42
USP53-201ENST00000274030 HIP1RO75146 1068 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 CYP2D6P10635 497 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 CASP1P29466 404 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 CDK8P49336 464 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 MMEL1Q495T6 779 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 MIS18BP1Q6P0N0 1132 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 DNAJC17Q9NVM6 304 aaKnown RBP12.44□□□□□ -0.42
USP53-201ENST00000274030 GAP43P17677 238 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 BASP1P80723 227 aaKnown RBP12.44□□□□□ -0.42
USP53-201ENST00000274030 TMTC4Q5T4D3 741 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 DNAAF3Q8N9W5 541 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 CDKL2Q92772 493 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 PAGE5Q96GU1 130 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 FIS1Q9Y3D6 152 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 WDR17Q8IZU2 1322 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 GPC4O75487 556 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 SLC7A5Q01650 507 aa12.44□□□□□ -0.42
USP53-201ENST00000274030 NOP9Q86U38 636 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 202.6 ms