RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W BSC6Q08280 497 aa4.32□□□□□ -1.72
SSH4YKL124W ICT1Q12385 394 aa4.32□□□□□ -1.72
SSH4YKL124W PAR32Q12515 295 aaKnown RBP4.32□□□□□ -1.72
SSH4YKL124W RRP12Q12754 1228 aaKnown RBP4.32□□□□□ -1.72
SSH4YKL124W STE2D6VTK4 431 aa4.32□□□□□ -1.72
SSH4YKL124W DBP3P20447 523 aaKnown RBP4.32□□□□□ -1.72
SSH4YKL124W CLB1P24868 471 aa4.32□□□□□ -1.72
SSH4YKL124W RRP7P25368 297 aaPredicted RBP4.32□□□□□ -1.72
SSH4YKL124W SPS22P25380 463 aa4.32□□□□□ -1.72
SSH4YKL124W RER1P25560 188 aa4.32□□□□□ -1.72
SSH4YKL124W HOG1P32485 435 aa4.32□□□□□ -1.72
SSH4YKL124W PTR2P32901 601 aa4.32□□□□□ -1.72
SSH4YKL124W DOM34P33309 386 aa4.32□□□□□ -1.72
SSH4YKL124W SKN1P33336 771 aa4.32□□□□□ -1.72
SSH4YKL124W SKT5P34226 696 aa4.32□□□□□ -1.72
SSH4YKL124W LAS1P36146 502 aaPredicted RBP4.32□□□□□ -1.72
SSH4YKL124W GIC1P38785 314 aa4.32□□□□□ -1.72
SSH4YKL124W MPT5P39016 859 aaKnown RBP RIP-Chip data4.32□□□□□ -1.72not detected
SSH4YKL124W CCT2P39076 527 aaKnown RBP4.32□□□□□ -1.72
SSH4YKL124W SIT1P39980 628 aa4.32□□□□□ -1.72
SSH4YKL124W YJL068CP40363 299 aa4.32□□□□□ -1.72
SSH4YKL124W PFA3P42836 336 aa4.32□□□□□ -1.72
SSH4YKL124W CCT7P42943 550 aaKnown RBP4.32□□□□□ -1.72
SSH4YKL124W QRI7P43122 407 aa4.32□□□□□ -1.72
SSH4YKL124W BOL2P53082 120 aa4.32□□□□□ -1.72
SSH4YKL124W MPS2P53159 387 aa4.32□□□□□ -1.72
SSH4YKL124W GIM3P53900 129 aa4.32□□□□□ -1.72
SSH4YKL124W PRO2P54885 456 aaKnown RBP4.32□□□□□ -1.72
SSH4YKL124W ECM9Q02202 377 aa4.32□□□□□ -1.72
SSH4YKL124W RSM10Q03201 203 aa4.32□□□□□ -1.72
SSH4YKL124W SSQ1Q05931 657 aaPredicted RBP4.32□□□□□ -1.72
SSH4YKL124W ARR1Q06596 294 aa4.32□□□□□ -1.72
SSH4YKL124W YLR358CO13565 187 aa4.31□□□□□ -1.72
SSH4YKL124W PHO5P00635 467 aa4.31□□□□□ -1.72
SSH4YKL124W ADE8P04161 214 aa4.31□□□□□ -1.72
SSH4YKL124W ARG81P05085 880 aa4.31□□□□□ -1.72
SSH4YKL124W GCY1P14065 312 aaKnown RBP RIP-Chip data4.31□□□□□ -1.72not detected
SSH4YKL124W RPO26P20435 155 aa4.31□□□□□ -1.72
SSH4YKL124W BAS1P22035 811 aa4.31□□□□□ -1.72
SSH4YKL124W RPB10P22139 70 aa4.31□□□□□ -1.72
SSH4YKL124W PTP1P25044 335 aa4.31□□□□□ -1.72
SSH4YKL124W ATP11P32453 318 aa4.31□□□□□ -1.72
SSH4YKL124W MDL1P33310 695 aa4.31□□□□□ -1.72
SSH4YKL124W EMC3P36039 253 aa4.31□□□□□ -1.72
SSH4YKL124W SPP381P38282 291 aaPredicted RBP4.31□□□□□ -1.72
SSH4YKL124W MUP3P38734 546 aa4.31□□□□□ -1.72
SSH4YKL124W YHR182WP38870 785 aa4.31□□□□□ -1.72
SSH4YKL124W REV7P38927 245 aa4.31□□□□□ -1.72
SSH4YKL124W LYS1P38998 373 aaRIP-Chip data4.31□□□□□ -1.72not detected
SSH4YKL124W VHR1P40522 640 aa4.31□□□□□ -1.72
SSH4YKL124W LOC1P43586 204 aaPredicted RBP4.31□□□□□ -1.72
SSH4YKL124W NOP9P47077 666 aaKnown RBP4.31□□□□□ -1.72
SSH4YKL124W COS12P53053 380 aa4.31□□□□□ -1.72
SSH4YKL124W ARE2P53629 642 aaKnown RBP4.31□□□□□ -1.72
SSH4YKL124W PEX25Q02969 394 aa4.31□□□□□ -1.72
SSH4YKL124W RSM28Q03430 361 aa4.31□□□□□ -1.72
SSH4YKL124W CTK1Q03957 528 aaKnown RBP4.31□□□□□ -1.72
SSH4YKL124W BCH1Q05029 724 aa4.31□□□□□ -1.72
SSH4YKL124W YLR177WQ06251 628 aa4.31□□□□□ -1.72
SSH4YKL124W FRA1Q07825 749 aa4.31□□□□□ -1.72
SSH4YKL124W YPL278CQ08990 100 aa4.31□□□□□ -1.72
SSH4YKL124W DIN7Q12086 430 aa4.31□□□□□ -1.72
SSH4YKL124W MRH1Q12117 320 aaPredicted RBP4.31□□□□□ -1.72
SSH4YKL124W LEU9Q12166 604 aaKnown RBP4.31□□□□□ -1.72
SSH4YKL124W KCS1Q12494 1050 aa4.31□□□□□ -1.72
SSH4YKL124W LAG2Q92325 660 aa4.31□□□□□ -1.72
SSH4YKL124W ENA1P13587 1091 aa4.3□□□□□ -1.72
SSH4YKL124W PRP2P20095 876 aaPredicted RBP4.3□□□□□ -1.72
SSH4YKL124W ARG1P22768 420 aa4.3□□□□□ -1.72
SSH4YKL124W PRE9P23638 258 aaKnown RBP4.3□□□□□ -1.72
SSH4YKL124W ERG3P32353 365 aa4.3□□□□□ -1.72
SSH4YKL124W DAL3P32459 195 aa4.3□□□□□ -1.72
SSH4YKL124W DOA4P32571 926 aa4.3□□□□□ -1.72
SSH4YKL124W SSE1P32589 693 aaKnown RBP4.3□□□□□ -1.72
SSH4YKL124W MGM101P32787 269 aaKnown RBP4.3□□□□□ -1.72
SSH4YKL124W SQT1P35184 431 aa4.3□□□□□ -1.72
SSH4YKL124W ETR1P38071 380 aa4.3□□□□□ -1.72
SSH4YKL124W YHR127WP38833 243 aaKnown RBP4.3□□□□□ -1.72
SSH4YKL124W AXL2P38928 823 aa4.3□□□□□ -1.72
SSH4YKL124W YHB1P39676 399 aaKnown RBP4.3□□□□□ -1.72
SSH4YKL124W SSP120P39931 234 aaKnown RBP4.3□□□□□ -1.72
SSH4YKL124W CFD1P40558 293 aa4.3□□□□□ -1.72
SSH4YKL124W ENA2Q01896 1091 aa4.3□□□□□ -1.72
SSH4YKL124W NHP10Q03435 203 aa4.3□□□□□ -1.72
SSH4YKL124W YMR155WQ03795 547 aa4.3□□□□□ -1.72
SSH4YKL124W VID22Q05934 901 aa4.3□□□□□ -1.72
SSH4YKL124W RRT8Q08219 342 aa4.3□□□□□ -1.72
SSH4YKL124W FRE6Q12473 712 aa4.3□□□□□ -1.72
SSH4YKL124W ENA5Q12691 1091 aa4.3□□□□□ -1.72
SSH4YKL124W HRP1Q99383 534 aaKnown RBP4.3□□□□□ -1.72
SSH4YKL124W AI3P03877 415 aa4.29□□□□□ -1.72
SSH4YKL124W SEC53P07283 254 aaKnown RBP4.29□□□□□ -1.72
SSH4YKL124W PRP16P15938 1071 aaPredicted RBP4.29□□□□□ -1.72
SSH4YKL124W PDC5P16467 563 aaKnown RBP4.29□□□□□ -1.72
SSH4YKL124W BUB3P26449 341 aa4.29□□□□□ -1.72
SSH4YKL124W PUP2P32379 260 aa4.29□□□□□ -1.72
SSH4YKL124W HIR2P32480 875 aa4.29□□□□□ -1.72
SSH4YKL124W CYM1P32898 989 aa4.29□□□□□ -1.72
SSH4YKL124W SOL2P37262 315 aa4.29□□□□□ -1.72
SSH4YKL124W EFM1P38732 585 aa4.29□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 42.3 ms