RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 VSIG10LQ86VR7 867 aa22.08■■□□□ 1.13
CCDC28A-203ENST00000617445 GUCD1Q96NT3 240 aa22.08■■□□□ 1.13
CCDC28A-203ENST00000617445 SPZ1Q9BXG8 430 aa22.08■■□□□ 1.13
CCDC28A-203ENST00000617445 ANO2Q9NQ90 1003 aa22.08■■□□□ 1.13
CCDC28A-203ENST00000617445 CALM1P0DP23 149 aa22.07■■□□□ 1.12
CCDC28A-203ENST00000617445 CALM2P0DP24 149 aa22.07■■□□□ 1.12
CCDC28A-203ENST00000617445 CALM3P0DP25 149 aa22.07■■□□□ 1.12
CCDC28A-203ENST00000617445 TGFB3P10600 412 aa22.07■■□□□ 1.12
CCDC28A-203ENST00000617445 ARHGAP1Q07960 439 aa22.07■■□□□ 1.12
CCDC28A-203ENST00000617445 LAMC2Q13753 1193 aa22.07■■□□□ 1.12
CCDC28A-203ENST00000617445 SLC17A8Q8NDX2 589 aa22.07■■□□□ 1.12
CCDC28A-203ENST00000617445 AFG1LQ8WV93 481 aa22.07■■□□□ 1.12
CCDC28A-203ENST00000617445 HERVK_113Q902F9 699 aa22.07■■□□□ 1.12
CCDC28A-203ENST00000617445 MRVI1Q9Y6F6 885 aa22.07■■□□□ 1.12
CCDC28A-203ENST00000617445 MYH7BA7E2Y1 1941 aa22.06■■□□□ 1.12
CCDC28A-203ENST00000617445 CCDC69A6NI79 296 aa22.06■■□□□ 1.12
CCDC28A-203ENST00000617445 FGBP02675 491 aa22.06■■□□□ 1.12
CCDC28A-203ENST00000617445 PFKMP08237 780 aa22.06■■□□□ 1.12
CCDC28A-203ENST00000617445 MMP3P08254 477 aa22.06■■□□□ 1.12
CCDC28A-203ENST00000617445 HOXA13P31271 388 aaPredicted RBP22.06■■□□□ 1.12
CCDC28A-203ENST00000617445 PGM5Q15124 567 aa22.06■■□□□ 1.12
CCDC28A-203ENST00000617445 DGKDQ16760 1214 aa22.06■■□□□ 1.12
CCDC28A-203ENST00000617445 FAM47CQ5HY64 1035 aa22.06■■□□□ 1.12
CCDC28A-203ENST00000617445 NFXL1Q6ZNB6 911 aa22.06■■□□□ 1.12
CCDC28A-203ENST00000617445 RRP36Q96EU6 259 aaKnown RBP22.06■■□□□ 1.12
CCDC28A-203ENST00000617445 TRMT13Q9NUP7 481 aaKnown RBP22.06■■□□□ 1.12
CCDC28A-203ENST00000617445 SH2B2O14492 632 aaPredicted RBP22.05■■□□□ 1.12
CCDC28A-203ENST00000617445 ACRP10323 421 aa22.05■■□□□ 1.12
CCDC28A-203ENST00000617445 MYCLP12524 364 aaPredicted RBP22.05■■□□□ 1.12
CCDC28A-203ENST00000617445 CCND2P30279 289 aa22.05■■□□□ 1.12
CCDC28A-203ENST00000617445 PPTC7Q8NI37 304 aa22.05■■□□□ 1.12
CCDC28A-203ENST00000617445 FAM161BQ96MY7 647 aa22.05■■□□□ 1.12
CCDC28A-203ENST00000617445 SEC63Q9UGP8 760 aaKnown RBP22.05■■□□□ 1.12
CCDC28A-203ENST00000617445 PITPNM1O00562 1244 aa22.04■■□□□ 1.12
CCDC28A-203ENST00000617445 STAM2O75886 525 aa22.04■■□□□ 1.12
CCDC28A-203ENST00000617445 CCL23P55773 120 aa22.04■■□□□ 1.12
CCDC28A-203ENST00000617445 SESTD1Q86VW0 696 aa22.04■■□□□ 1.12
CCDC28A-203ENST00000617445 DHX37Q8IY37 1157 aaKnown RBP22.04■■□□□ 1.12
CCDC28A-203ENST00000617445 WNT8AQ9H1J5 351 aa22.04■■□□□ 1.12
CCDC28A-203ENST00000617445 UMODL1Q5DID0 1318 aa22.04■■□□□ 1.12
CCDC28A-203ENST00000617445 MYO9BQ13459 2157 aa22.04■■□□□ 1.12
CCDC28A-203ENST00000617445 DNAJB2P25686 324 aa22.03■■□□□ 1.12
CCDC28A-203ENST00000617445 RFC2P35250 354 aa22.03■■□□□ 1.12
CCDC28A-203ENST00000617445 FCHSD1Q86WN1 690 aa22.03■■□□□ 1.12
CCDC28A-203ENST00000617445 RETREG2Q8NC44 543 aa22.03■■□□□ 1.12
CCDC28A-203ENST00000617445 CDX2Q99626 313 aaPredicted RBP22.03■■□□□ 1.12
CCDC28A-203ENST00000617445 KATNAL1Q9BW62 490 aa22.03■■□□□ 1.12
CCDC28A-203ENST00000617445 TTYH1Q9H313 450 aaPredicted RBP22.03■■□□□ 1.12
CCDC28A-203ENST00000617445 NOD1Q9Y239 953 aa22.03■■□□□ 1.12
CCDC28A-203ENST00000617445 SLC12A7Q9Y666 1083 aa22.03■■□□□ 1.12
CCDC28A-203ENST00000617445 PPFIA4O75335 1185 aa22.02■■□□□ 1.12
CCDC28A-203ENST00000617445 RGS20O76081 388 aa22.02■■□□□ 1.12
CCDC28A-203ENST00000617445 CYP2C9P11712 490 aa22.02■■□□□ 1.12
CCDC28A-203ENST00000617445 BFSP2Q13515 415 aa22.02■■□□□ 1.12
CCDC28A-203ENST00000617445 TSGA10IPQ3SY00 556 aa22.02■■□□□ 1.12
CCDC28A-203ENST00000617445 SGMS1Q86VZ5 419 aa22.02■■□□□ 1.12
CCDC28A-203ENST00000617445 CUL5Q93034 780 aa22.02■■□□□ 1.12
CCDC28A-203ENST00000617445 MYL10Q9BUA6 226 aa22.02■■□□□ 1.12
CCDC28A-203ENST00000617445 FRMPD4Q14CM0 1322 aa22.02■■□□□ 1.12
CCDC28A-203ENST00000617445 PIK3CDO00329 1044 aa22.01■■□□□ 1.11
CCDC28A-203ENST00000617445 CDC45O75419 566 aa22.01■■□□□ 1.11
CCDC28A-203ENST00000617445 HOXD8P13378 290 aaPredicted RBP22.01■■□□□ 1.11
CCDC28A-203ENST00000617445 GNPTABQ3T906 1256 aa22.01■■□□□ 1.11
CCDC28A-203ENST00000617445 CELF3Q5SZQ8 465 aaKnown RBP22.01■■□□□ 1.11
CCDC28A-203ENST00000617445 MYSM1Q5VVJ2 828 aa22.01■■□□□ 1.11
CCDC28A-203ENST00000617445 XRRA1Q6P2D8 792 aa22.01■■□□□ 1.11
CCDC28A-203ENST00000617445 SYNE3Q6ZMZ3 975 aa22.01■■□□□ 1.11
CCDC28A-203ENST00000617445 CCDC155Q8N6L0 562 aa22.01■■□□□ 1.11
CCDC28A-203ENST00000617445 KAT2BQ92831 832 aa22.01■■□□□ 1.11
CCDC28A-203ENST00000617445 TIFAQ96CG3 184 aa22.01■■□□□ 1.11
CCDC28A-203ENST00000617445 KRT32Q14532 448 aa22■■□□□ 1.11
CCDC28A-203ENST00000617445 RAB30Q15771 203 aa22■■□□□ 1.11
CCDC28A-203ENST00000617445 PTGISQ16647 500 aa22■■□□□ 1.11
CCDC28A-203ENST00000617445 SRBD1Q8N5C6 995 aaKnown RBP22■■□□□ 1.11
CCDC28A-203ENST00000617445 FANCBQ8NB91 859 aa22■■□□□ 1.11
CCDC28A-203ENST00000617445 CAGE1Q8TC20 777 aa22■■□□□ 1.11
CCDC28A-203ENST00000617445 PIBF1Q8WXW3 757 aa22■■□□□ 1.11
CCDC28A-203ENST00000617445 SCLYQ96I15 445 aa22■■□□□ 1.11
CCDC28A-203ENST00000617445 NEK1Q96PY6 1258 aa22■■□□□ 1.11
CCDC28A-203ENST00000617445 MSRAQ9UJ68 235 aa22■■□□□ 1.11
CCDC28A-203ENST00000617445 OTOP2Q7RTS6 562 aa21.99■■□□□ 1.11
CCDC28A-203ENST00000617445 C7orf31Q8N865 590 aa21.99■■□□□ 1.11
CCDC28A-203ENST00000617445 IL31RAQ8NI17 732 aa21.99■■□□□ 1.11
CCDC28A-203ENST00000617445 SMARCC2Q8TAQ2 1214 aa21.99■■□□□ 1.11
CCDC28A-203ENST00000617445 SPATA33Q96N06 139 aa21.99■■□□□ 1.11
CCDC28A-203ENST00000617445 TRIP12Q14669 1992 aaPredicted RBP21.99■■□□□ 1.11
CCDC28A-203ENST00000617445 PARNO95453 639 aaKnown RBP21.98■■□□□ 1.11
CCDC28A-203ENST00000617445 GGPS1O95749 300 aa21.98■■□□□ 1.11
CCDC28A-203ENST00000617445 F2P00734 622 aa21.98■■□□□ 1.11
CCDC28A-203ENST00000617445 ACTN1P12814 892 aa21.98■■□□□ 1.11
CCDC28A-203ENST00000617445 ICAM3P32942 547 aa21.98■■□□□ 1.11
CCDC28A-203ENST00000617445 PSEN2P49810 448 aa21.98■■□□□ 1.11
CCDC28A-203ENST00000617445 CHMP4BP1P59074 171 aa21.98■■□□□ 1.11
CCDC28A-203ENST00000617445 INPP4AQ96PE3 977 aaPredicted RBP21.98■■□□□ 1.11
CCDC28A-203ENST00000617445 PBX4Q9BYU1 374 aa21.98■■□□□ 1.11
CCDC28A-203ENST00000617445 ZNF576Q9H609 170 aa21.98■■□□□ 1.11
CCDC28A-203ENST00000617445 MLXIPQ9HAP2 919 aa21.98■■□□□ 1.11
CCDC28A-203ENST00000617445 CXXC1Q9P0U4 656 aaPredicted RBP21.98■■□□□ 1.11
CCDC28A-203ENST00000617445 SLC4A7Q9Y6M7 1214 aa21.98■■□□□ 1.11
CCDC28A-203ENST00000617445 HAS3O00219 553 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms