RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 XRRA1Q6P2D8 792 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 USP17L6PQ6QN14 398 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 SEPT14Q6ZU15 432 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 POTEDQ86YR6 584 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 IL27Q8NEV9 243 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 PHKBQ93100 1093 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 GLT1D1Q96MS3 346 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 NCOA5Q9HCD5 579 aaKnown RBP14.91□□□□□ -0.02
CLK3-224ENST00000568605 RIC8AQ9NPQ8 531 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 PDGFCQ9NRA1 345 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 GNEQ9Y223 722 aaKnown RBP14.91□□□□□ -0.02
CLK3-224ENST00000568605 MRVI1Q9Y6F6 885 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 MEIS2O14770 477 aa14.9□□□□□ -0.02
CLK3-224ENST00000568605 DEXIO95424 95 aa14.9□□□□□ -0.02
CLK3-224ENST00000568605 FOSP01100 380 aaPredicted RBP14.9□□□□□ -0.02
CLK3-224ENST00000568605 TXNP10599 105 aaKnown RBP14.9□□□□□ -0.02
CLK3-224ENST00000568605 GNA11P29992 359 aa14.9□□□□□ -0.02
CLK3-224ENST00000568605 RBM25P49756 843 aaKnown RBP14.9□□□□□ -0.02
CLK3-224ENST00000568605 ACLYP53396 1101 aa14.9□□□□□ -0.02
CLK3-224ENST00000568605 AP3B2Q13367 1082 aa14.9□□□□□ -0.02
CLK3-224ENST00000568605 FSCN1Q16658 493 aaKnown RBP14.9□□□□□ -0.02
CLK3-224ENST00000568605 GNASQ5JWF2 1037 aa14.9□□□□□ -0.02
CLK3-224ENST00000568605 KLHDC9Q8NEP7 349 aa14.9□□□□□ -0.02
CLK3-224ENST00000568605 OR6J1Q8NGC5 347 aa14.9□□□□□ -0.02
CLK3-224ENST00000568605 BICD2Q8TD16 824 aa14.9□□□□□ -0.02
CLK3-224ENST00000568605 C6orf50Q9HD87 102 aa14.9□□□□□ -0.02
CLK3-224ENST00000568605 STK36Q9NRP7 1315 aa14.9□□□□□ -0.02
CLK3-224ENST00000568605 A0A1W2PQ45 241 aaPredicted RBP14.89□□□□□ -0.03
CLK3-224ENST00000568605 A0A1W2PQY0 241 aa14.89□□□□□ -0.03
CLK3-224ENST00000568605 SMCO2A6NFE2 343 aa14.89□□□□□ -0.03
CLK3-224ENST00000568605 DYNC1LI2O43237 492 aaPredicted RBP14.89□□□□□ -0.03
CLK3-224ENST00000568605 PFKFB2O60825 505 aa14.89□□□□□ -0.03
CLK3-224ENST00000568605 NKX3-2P78367 333 aa14.89□□□□□ -0.03
CLK3-224ENST00000568605 UBE2SQ16763 222 aa14.89□□□□□ -0.03
CLK3-224ENST00000568605 PRPF38BQ5VTL8 546 aaKnown RBP14.89□□□□□ -0.03
CLK3-224ENST00000568605 PCNX4Q63HM2 1172 aa14.89□□□□□ -0.03
CLK3-224ENST00000568605 VSIG10LQ86VR7 867 aa14.89□□□□□ -0.03
CLK3-224ENST00000568605 FAM177A1Q8N128 213 aaPredicted RBP14.89□□□□□ -0.03
CLK3-224ENST00000568605 LARP6Q9BRS8 491 aaKnown RBP14.89□□□□□ -0.03
CLK3-224ENST00000568605 STARD7Q9NQZ5 370 aa14.89□□□□□ -0.03
CLK3-224ENST00000568605 SH3GLB2Q9NR46 395 aa14.89□□□□□ -0.03
CLK3-224ENST00000568605 POLR3EQ9NVU0 708 aa14.89□□□□□ -0.03
CLK3-224ENST00000568605 TPCN1Q9ULQ1 816 aa14.89□□□□□ -0.03
CLK3-224ENST00000568605 MROH7Q68CQ1 1323 aa14.89□□□□□ -0.03
CLK3-224ENST00000568605 MYADML2A6NDP7 307 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 CABYRO75952 493 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 GH1P01241 217 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 ASGR1P07306 291 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 XBP1P17861 261 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 SCRN1Q12765 414 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 RABEP1Q15276 862 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 KCNA10Q16322 511 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 NLRX1Q86UT6 975 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 C7orf61Q8IZ16 206 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 REXO1Q8N1G1 1221 aaKnown RBP14.88□□□□□ -0.03
CLK3-224ENST00000568605 IL31RAQ8NI17 732 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 FERMT2Q96AC1 680 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 CDHR1Q96JP9 859 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 ZMYND12Q9H0C1 365 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 ELP1O95163 1332 aa14.88□□□□□ -0.03
CLK3-224ENST00000568605 TRIP12Q14669 1992 aaPredicted RBP14.87□□□□□ -0.03
CLK3-224ENST00000568605 ST18O60284 1047 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 KPNA6O60684 536 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 TGFB3P10600 412 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 ATN1P54259 1190 aaPredicted RBP14.87□□□□□ -0.03
CLK3-224ENST00000568605 BEX3Q00994 111 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 SNX17Q15036 470 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 PKN1Q16512 942 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 C1orf53Q5VUE5 145 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 TYW1BQ6NUM6 668 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 WASF1Q92558 559 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 GTF3C6Q969F1 213 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 SEZ6LQ9BYH1 1024 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 ANO3Q9BYT9 981 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 PCDHA6Q9UN73 950 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 PCDHA8Q9Y5H6 950 aa14.87□□□□□ -0.03
CLK3-224ENST00000568605 A0A0U1RQG5 324 aaPredicted RBP14.86□□□□□ -0.03
CLK3-224ENST00000568605 FIBPO43427 364 aa14.86□□□□□ -0.03
CLK3-224ENST00000568605 RTP1P59025 263 aa14.86□□□□□ -0.03
CLK3-224ENST00000568605 LRRC26Q2I0M4 334 aa14.86□□□□□ -0.03
CLK3-224ENST00000568605 CCSAPQ6IQ19 270 aaPredicted RBP14.86□□□□□ -0.03
CLK3-224ENST00000568605 CCDC62Q6P9F0 684 aa14.86□□□□□ -0.03
CLK3-224ENST00000568605 SLC39A5Q6ZMH5 540 aa14.86□□□□□ -0.03
CLK3-224ENST00000568605 VTI1AQ96AJ9 217 aa14.86□□□□□ -0.03
CLK3-224ENST00000568605 INPP4AQ96PE3 977 aaPredicted RBP14.86□□□□□ -0.03
CLK3-224ENST00000568605 PRKAG2Q9UGJ0 569 aa14.86□□□□□ -0.03
CLK3-224ENST00000568605 DDX41Q9UJV9 622 aaKnown RBP14.86□□□□□ -0.03
CLK3-224ENST00000568605 ATP11BQ9Y2G3 1177 aa14.86□□□□□ -0.03
CLK3-224ENST00000568605 CTAGE5O15320 804 aa14.85□□□□□ -0.03
CLK3-224ENST00000568605 ARIH2O95376 493 aa14.85□□□□□ -0.03
CLK3-224ENST00000568605 MRPS9P82933 396 aaKnown RBP14.85□□□□□ -0.03
CLK3-224ENST00000568605 LAMC2Q13753 1193 aa14.85□□□□□ -0.03
CLK3-224ENST00000568605 NEDD9Q14511 834 aa14.85□□□□□ -0.03
CLK3-224ENST00000568605 ME3Q16798 604 aa14.85□□□□□ -0.03
CLK3-224ENST00000568605 GALNT17Q6IS24 598 aa14.85□□□□□ -0.03
CLK3-224ENST00000568605 DHX37Q8IY37 1157 aaKnown RBP14.85□□□□□ -0.03
CLK3-224ENST00000568605 GIMAP8Q8ND71 665 aaPredicted RBP14.85□□□□□ -0.03
CLK3-224ENST00000568605 EMID1Q96A84 441 aaPredicted RBP14.85□□□□□ -0.03
CLK3-224ENST00000568605 GPRASP2Q96D09 838 aa14.85□□□□□ -0.03
CLK3-224ENST00000568605 VPS54Q9P1Q0 977 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms