RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 TRPV6Q9H1D0 765 aa13.59□□□□□ -0.23
LDLR-212ENST00000560467 HIPK3Q9H422 1215 aa13.59□□□□□ -0.23
LDLR-212ENST00000560467 GPHNQ9NQX3 736 aaPredicted RBP13.59□□□□□ -0.23
LDLR-212ENST00000560467 PDGFCQ9NRA1 345 aa13.59□□□□□ -0.23
LDLR-212ENST00000560467 THEGQ9P2T0 379 aa13.59□□□□□ -0.23
LDLR-212ENST00000560467 MSRAQ9UJ68 235 aa13.59□□□□□ -0.23
LDLR-212ENST00000560467 BRPF3Q9ULD4 1205 aa13.59□□□□□ -0.23
LDLR-212ENST00000560467 CIZ1Q9ULV3 898 aaPredicted RBP13.59□□□□□ -0.23
LDLR-212ENST00000560467 GRIN2DO15399 1336 aa13.59□□□□□ -0.23
LDLR-212ENST00000560467 NMT2O60551 498 aa13.58□□□□□ -0.24
LDLR-212ENST00000560467 ALAS1P13196 640 aa13.58□□□□□ -0.24
LDLR-212ENST00000560467 IGFBP4P22692 258 aa13.58□□□□□ -0.24
LDLR-212ENST00000560467 STAT2P52630 851 aa13.58□□□□□ -0.24
LDLR-212ENST00000560467 CCL23P55773 120 aa13.58□□□□□ -0.24
LDLR-212ENST00000560467 PSMC6P62333 389 aa13.58□□□□□ -0.24
LDLR-212ENST00000560467 SSRP1Q08945 709 aaKnown RBP13.58□□□□□ -0.24
LDLR-212ENST00000560467 ITGA7Q13683 1181 aa13.58□□□□□ -0.24
LDLR-212ENST00000560467 RAB30Q15771 203 aa13.58□□□□□ -0.24
LDLR-212ENST00000560467 KCTD1Q719H9 257 aa13.58□□□□□ -0.24
LDLR-212ENST00000560467 EEPD1Q7L9B9 569 aa13.58□□□□□ -0.24
LDLR-212ENST00000560467 OTOP2Q7RTS6 562 aa13.58□□□□□ -0.24
LDLR-212ENST00000560467 NOC4LQ9BVI4 516 aaKnown RBP13.58□□□□□ -0.24
LDLR-212ENST00000560467 WNT8AQ9H1J5 351 aa13.58□□□□□ -0.24
LDLR-212ENST00000560467 IL17RBQ9NRM6 502 aa13.58□□□□□ -0.24
LDLR-212ENST00000560467 ASB14A6NK59 587 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 DYNC1LI2O43237 492 aaPredicted RBP13.57□□□□□ -0.24
LDLR-212ENST00000560467 B4GALT4O60513 344 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 PARP1P09874 1014 aaKnown RBP13.57□□□□□ -0.24
LDLR-212ENST00000560467 XBP1P17861 261 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 SLC1A4P43007 532 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 RABGGTBP53611 331 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 SCRN1Q12765 414 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 TRIM29Q14134 588 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 MUM1L1Q5H9M0 696 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 FAM160B2Q86V87 743 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 ADAMTS19Q8TE59 1207 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 ATXN2LQ8WWM7 1075 aaKnown RBP13.57□□□□□ -0.24
LDLR-212ENST00000560467 GMCL1Q96IK5 515 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 TRERF1Q96PN7 1200 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 ASB2Q96Q27 587 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 PURBQ96QR8 312 aaKnown RBP13.57□□□□□ -0.24
LDLR-212ENST00000560467 AP5M1Q9H0R1 490 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 CHMP5Q9NZZ3 219 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 RAPGEFL1Q9UHV5 662 aa13.57□□□□□ -0.24
LDLR-212ENST00000560467 H3BQV1 296 aa13.56□□□□□ -0.24
LDLR-212ENST00000560467 CABYRO75952 493 aa13.56□□□□□ -0.24
LDLR-212ENST00000560467 FGBP02675 491 aa13.56□□□□□ -0.24
LDLR-212ENST00000560467 FDX1P10109 184 aa13.56□□□□□ -0.24
LDLR-212ENST00000560467 MYOGP15173 224 aa13.56□□□□□ -0.24
LDLR-212ENST00000560467 COL9A1P20849 921 aa13.56□□□□□ -0.24
LDLR-212ENST00000560467 GJB2P29033 226 aa13.56□□□□□ -0.24
LDLR-212ENST00000560467 TAPT1Q6NXT6 567 aa13.56□□□□□ -0.24
LDLR-212ENST00000560467 CHURC1Q8WUH1 139 aa13.56□□□□□ -0.24
LDLR-212ENST00000560467 VWCEQ96DN2 955 aa13.56□□□□□ -0.24
LDLR-212ENST00000560467 MTIF3Q9H2K0 278 aaKnown RBP13.56□□□□□ -0.24
LDLR-212ENST00000560467 CYP39A1Q9NYL5 469 aa13.56□□□□□ -0.24
LDLR-212ENST00000560467 MTMR7Q9Y216 660 aa13.56□□□□□ -0.24
LDLR-212ENST00000560467 LAMA4Q16363 1823 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 CHD7Q9P2D1 2997 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 MCM3APO60318 1980 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 TROAPQ12815 778 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 COL9A3Q14050 684 aaPredicted RBP13.55□□□□□ -0.24
LDLR-212ENST00000560467 TKFCQ3LXA3 575 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 ASPRV1Q53RT3 343 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 GPATCH4Q5T3I0 446 aaKnown RBP13.55□□□□□ -0.24
LDLR-212ENST00000560467 LARP1BQ659C4 914 aaKnown RBP13.55□□□□□ -0.24
LDLR-212ENST00000560467 RCSD1Q6JBY9 416 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 NSMFQ6X4W1 530 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 RAB11FIP4Q86YS3 637 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 MICALL1Q8N3F8 863 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 DCAF4Q8WV16 495 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 SCLYQ96I15 445 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 MYL10Q9BUA6 226 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 SLC28A3Q9HAS3 691 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 NCOA5Q9HCD5 579 aaKnown RBP13.55□□□□□ -0.24
LDLR-212ENST00000560467 ORC3Q9UBD5 711 aaPredicted RBP13.55□□□□□ -0.24
LDLR-212ENST00000560467 CCPG1Q9ULG6 757 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 PRR12Q9ULL5 1215 aa13.55□□□□□ -0.24
LDLR-212ENST00000560467 NCOR1O75376 2440 aa13.54□□□□□ -0.24
LDLR-212ENST00000560467 PTPDC1A2A3K4 754 aa13.54□□□□□ -0.24
LDLR-212ENST00000560467 ZBBXA8MT70 800 aa13.54□□□□□ -0.24
LDLR-212ENST00000560467 ZEB2O60315 1214 aa13.54□□□□□ -0.24
LDLR-212ENST00000560467 LARGE1O95461 756 aa13.54□□□□□ -0.24
LDLR-212ENST00000560467 RXRAP19793 462 aa13.54□□□□□ -0.24
LDLR-212ENST00000560467 ADD1P35611 737 aaKnown RBP13.54□□□□□ -0.24
LDLR-212ENST00000560467 MRPS5P82675 430 aaKnown RBP13.54□□□□□ -0.24
LDLR-212ENST00000560467 GRM4Q14833 912 aa13.54□□□□□ -0.24
LDLR-212ENST00000560467 CCDC96Q2M329 555 aa13.54□□□□□ -0.24
LDLR-212ENST00000560467 UHRF1Q96T88 793 aaPredicted RBP13.54□□□□□ -0.24
LDLR-212ENST00000560467 SENP2Q9HC62 589 aa13.54□□□□□ -0.24
LDLR-212ENST00000560467 TRMT13Q9NUP7 481 aaKnown RBP13.54□□□□□ -0.24
LDLR-212ENST00000560467 ATP6V1DQ9Y5K8 247 aa13.54□□□□□ -0.24
LDLR-212ENST00000560467 SLC4A7Q9Y6M7 1214 aa13.54□□□□□ -0.24
LDLR-212ENST00000560467 MYO9BQ13459 2157 aa13.54□□□□□ -0.24
LDLR-212ENST00000560467 PLA2G6O60733 806 aa13.53□□□□□ -0.24
LDLR-212ENST00000560467 CYP2C9P11712 490 aa13.53□□□□□ -0.24
LDLR-212ENST00000560467 IFNAR1P17181 557 aa13.53□□□□□ -0.24
LDLR-212ENST00000560467 SMARCA1P28370 1054 aa13.53□□□□□ -0.24
LDLR-212ENST00000560467 NOVP48745 357 aa13.53□□□□□ -0.24
LDLR-212ENST00000560467 TRAF1Q13077 416 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms