RNA–Protein interactions for RNA: ENST00000551111.1

PRPF40B-212, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 1,061 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-212ENST00000551111 TMCO2Q7Z6W1 182 aaPredicted RBP13.49□□□□□ -0.25
PRPF40B-212ENST00000551111 IL31RAQ8NI17 732 aa13.49□□□□□ -0.25
PRPF40B-212ENST00000551111 MAD2L2Q9UI95 211 aa13.49□□□□□ -0.25
PRPF40B-212ENST00000551111 DDX41Q9UJV9 622 aaKnown RBP13.49□□□□□ -0.25
PRPF40B-212ENST00000551111 PNMA2Q9UL42 364 aa13.49□□□□□ -0.25
PRPF40B-212ENST00000551111 COL4A4P53420 1690 aaPredicted RBP13.49□□□□□ -0.25
PRPF40B-212ENST00000551111 MICAL3Q7RTP6 2002 aa13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 DHX16O60231 1041 aaKnown RBP13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 CFBP00751 764 aa13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 CA3P07451 260 aa13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 ZNF200P98182 395 aaPredicted RBP13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 AAMPQ13685 434 aa13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 TJAP1Q5JTD0 557 aa13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 PPP2R2DQ66LE6 453 aa13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 NSUN6Q8TEA1 469 aaKnown RBP13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 GPKOWQ92917 476 aaPredicted RBP eCLIP13.48□□□□□ -0.253e-7■■■■■ 29.3
PRPF40B-212ENST00000551111 WNT8BQ93098 351 aa13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 MTMR8Q96EF0 704 aa13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 MTIF3Q9H2K0 278 aaKnown RBP13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 BCAS3Q9H6U6 928 aa13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 PXMP2Q9NR77 195 aa13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 PCDHA11Q9Y5I1 949 aa13.48□□□□□ -0.25
PRPF40B-212ENST00000551111 PALM3A6NDB9 673 aaPredicted RBP13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 KLRF2D3W0D1 207 aa13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 KPNA6O60684 536 aa13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 GH1P01241 217 aa13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 NR3C2P08235 984 aa13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 ZNF286BP0CG31 522 aa13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 HOXA13P31271 388 aaPredicted RBP13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 HSD17B4P51659 736 aa13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 COL9A3Q14050 684 aaPredicted RBP13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 STXBP2Q15833 593 aa13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 PTGISQ16647 500 aa13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 CCDC178Q5BJE1 867 aa13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 IFIT1BQ5T764 474 aaKnown RBP13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 ARHGEF16Q5VV41 709 aa13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 MICALL1Q8N3F8 863 aa13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 KRT23Q9C075 422 aa13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 MRPL11Q9Y3B7 192 aaKnown RBP13.47□□□□□ -0.25
PRPF40B-212ENST00000551111 BDP1A6H8Y1 2624 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 RAD50Q92878 1312 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 HIP1O00291 1037 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 PITPNM1O00562 1244 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 CYTH3O43739 400 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 CYP21A2P08686 494 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 MYCLP12524 364 aaPredicted RBP13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 IRX6P78412 446 aaPredicted RBP13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 SP2Q02086 613 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 TFF2Q03403 129 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 PTPN11Q06124 597 aaPredicted RBP13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 BRDTQ58F21 947 aaPredicted RBP13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 TTC22Q5TAA0 569 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 STOX1Q6ZVD7 989 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 MCF2L2Q86YR7 1114 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 RETREG2Q8NC44 543 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 IWS1Q96ST2 819 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 MPHOSPH6Q99547 160 aaKnown RBP13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 PDCD2LQ9BRP1 358 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 UBAC1Q9BSL1 405 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 ALG1Q9BT22 464 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 FTOQ9C0B1 505 aaKnown RBP eCLIP13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 HDAC6Q9UBN7 1215 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 CTNNA3Q9UI47 895 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 TELO2Q9Y4R8 837 aa13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 SUPT16HQ9Y5B9 1047 aaKnown RBP13.46□□□□□ -0.25
PRPF40B-212ENST00000551111 LCHNA4D1U4 455 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 B4DLN1 442 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 NBNO60934 754 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 EIF3JO75822 258 aaKnown RBP13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 KCNA4P22459 653 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 PSEN2P49810 448 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 MRPL12P52815 198 aaKnown RBP13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 TAP1Q03518 808 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 TMEM67Q5HYA8 995 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 HOMER1Q86YM7 354 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 NECAB3Q96P71 396 aaPredicted RBP13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 ASB2Q96Q27 587 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 PIGSQ96S52 555 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 AMNQ9BXJ7 453 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 CNNM2Q9H8M5 875 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 THEGQ9P2T0 379 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 PCDHA1Q9Y5I3 950 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 MRVI1Q9Y6F6 885 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 SIP14410 1827 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 LOXHD1Q8IVV2 1947 aa13.45□□□□□ -0.26
PRPF40B-212ENST00000551111 MYO7AQ13402 2215 aa13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 HAS3O00219 553 aa13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 ZBTB5O15062 677 aa13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 PFKMP08237 780 aa13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 CKBP12277 381 aa13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 CASTP20810 708 aaKnown RBP13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 CHMLP26374 656 aa13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 ANTXR2P58335 489 aa13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 DEFB103AP81534 67 aa13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 GHRHRQ02643 423 aa13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 BFSP2Q13515 415 aa13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 MBTPS1Q14703 1052 aa13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 GRM4Q14833 912 aa13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 TRIM71Q2Q1W2 868 aaKnown RBP13.44□□□□□ -0.26
PRPF40B-212ENST00000551111 HSDL1Q3SXM5 330 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms