RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 RNF114Q9Y508 228 aa7.11□□□□□ -1.27
HMGB1P38-201ENST00000490557 PCDHA9Q9Y5H5 950 aa7.11□□□□□ -1.27
HMGB1P38-201ENST00000490557 PCDHA8Q9Y5H6 950 aa7.11□□□□□ -1.27
HMGB1P38-201ENST00000490557 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.11□□□□□ -1.27
HMGB1P38-201ENST00000490557 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 SOD2P04179 222 aa7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 ST5P78524 1137 aa7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 FNDC3BQ53EP0 1204 aaKnown RBP7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 TMC6Q7Z403 805 aa7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 BRAPQ7Z569 592 aa7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 RIOX2Q8IUF8 465 aa7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 FEZ1Q99689 392 aa7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 KCNJ15Q99712 375 aa7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 ZNF552Q9H707 407 aaPredicted RBP7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 SIRT5Q9NXA8 310 aa7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 FBLN5Q9UBX5 448 aa7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 X6R8D5 127 aa7.1□□□□□ -1.27
HMGB1P38-201ENST00000490557 KRIT1O00522 736 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 ENPP3O14638 875 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 GSTA4O15217 222 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 SMARCA5O60264 1052 aaPredicted RBP7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 MAFKO60675 156 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 CRTAMO95727 393 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 GNAT1P11488 350 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 MAPKAPK2P49137 400 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 SRSF3P84103 164 aaKnown RBP7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 SPIRE1Q08AE8 756 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 CBX2Q14781 532 aaPredicted RBP7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 TRIM61Q5EBN2 209 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 FAM47CQ5HY64 1035 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 Q8N1Y9 231 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 FBXO15Q8NCQ5 510 aaPredicted RBP7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 SEC14L1Q92503 715 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 JAM3Q9BX67 310 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 RXFP1Q9HBX9 757 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 KLHL14Q9P2G3 628 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 CD2APQ9Y5K6 639 aa7.09□□□□□ -1.27
HMGB1P38-201ENST00000490557 LOC100996750A0A140TA64 210 aa7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 HRKO00198 91 aa7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 ZBTB7AO95365 584 aa7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 SRGAP2CP0DJJ0 459 aa7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 PRR5P85299 388 aa7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 SLC9A5Q14940 896 aa7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 PLEKHN1Q494U1 663 aaPredicted RBP7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 EP400NLQ6ZTU2 488 aa7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 GSTCDQ8NEC7 633 aa7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 SLC7A14Q8TBB6 771 aa7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 PANK1Q8TE04 598 aa7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 KRTAP4-6Q9BYQ5 205 aa7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 IPPKQ9H8X2 491 aa7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 PPARGC1AQ9UBK2 798 aaKnown RBP7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 NUB1Q9Y5A7 615 aa7.08□□□□□ -1.28
HMGB1P38-201ENST00000490557 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 OPA1O60313 960 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 PEX10O60683 326 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 FARP2O94887 1054 aaPredicted RBP7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 RASGRP1O95267 797 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 HSD3B2P26439 372 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 VIPR1P32241 457 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 SLC6A11P48066 632 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 YBX1P67809 324 aaKnown RBP7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 PABPC4Q13310 644 aaKnown RBP eCLIP7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 C21orf62-AS1Q17RA5 79 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 STEAP3Q658P3 488 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 NLGN1Q8N2Q7 840 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 FBXW5Q969U6 566 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 SLC38A3Q99624 504 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 CATSPERZQ9NTU4 200 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 PLAAQ9Y263 795 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 SIT1Q9Y3P8 196 aa7.07□□□□□ -1.28
HMGB1P38-201ENST00000490557 B4E1Z4 1266 aa7.06□□□□□ -1.28
HMGB1P38-201ENST00000490557 HGSO14964 777 aaPredicted RBP7.06□□□□□ -1.28
HMGB1P38-201ENST00000490557 RFPL3O75679 317 aa7.06□□□□□ -1.28
HMGB1P38-201ENST00000490557 FLT3P36888 993 aa7.06□□□□□ -1.28
HMGB1P38-201ENST00000490557 DNM2P50570 870 aa7.06□□□□□ -1.28
HMGB1P38-201ENST00000490557 TKFCQ3LXA3 575 aa7.06□□□□□ -1.28
HMGB1P38-201ENST00000490557 MILR1Q7Z6M3 343 aa7.06□□□□□ -1.28
HMGB1P38-201ENST00000490557 ALG3Q92685 438 aa7.06□□□□□ -1.28
HMGB1P38-201ENST00000490557 KCNN1Q92952 543 aa7.06□□□□□ -1.28
HMGB1P38-201ENST00000490557 YIPF4Q9BSR8 244 aa7.06□□□□□ -1.28
HMGB1P38-201ENST00000490557 ARVCFO00192 962 aa7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 KCNQ2O43526 872 aa7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 IGFALSP35858 605 aa7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 ZNF200P98182 395 aaPredicted RBP7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 CRY1Q16526 586 aa7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 NIM1KQ8IY84 436 aa7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 PCDH19Q8TAB3 1148 aa7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 PIP4K2CQ8TBX8 421 aa7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 DDX11Q96FC9 970 aa7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 CLUHP3Q96NS8 147 aa7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 CDIP1Q9H305 208 aa7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 TRIM39Q9HCM9 518 aa7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 PALD1Q9ULE6 856 aa7.05□□□□□ -1.28
HMGB1P38-201ENST00000490557 TEX51A0A1B0GUA7 166 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 TCRBV16S1A1N1A0A5B0 115 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 CCDC66A2RUB6 948 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 SEMA7AO75326 666 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 ASLP04424 464 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms