RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 KCTD13Q8WZ19 329 aa7.32□□□□□ -1.24
UPF3A-205ENST00000479712 TP53INP1Q96A56 240 aa7.32□□□□□ -1.24
UPF3A-205ENST00000479712 HEXIM2Q96MH2 286 aaKnown RBP7.32□□□□□ -1.24
UPF3A-205ENST00000479712 CLUHP3Q96NS8 147 aa7.32□□□□□ -1.24
UPF3A-205ENST00000479712 NKX2-4Q9H2Z4 354 aa7.32□□□□□ -1.24
UPF3A-205ENST00000479712 SFMBT1Q9UHJ3 866 aa7.32□□□□□ -1.24
UPF3A-205ENST00000479712 GPR55Q9Y2T6 319 aaPredicted RBP7.32□□□□□ -1.24
UPF3A-205ENST00000479712 NEXMIFQ5QGS0 1516 aa7.32□□□□□ -1.24
UPF3A-205ENST00000479712 EHBP1L1Q8N3D4 1523 aa7.32□□□□□ -1.24
UPF3A-205ENST00000479712 PITPNM2Q9BZ72 1349 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 PLEKHH2Q8IVE3 1493 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 GNAT3A8MTJ3 354 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 H0Y8X5 98 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 IGF2BP3O00425 579 aaKnown RBP eCLIP7.31□□□□□ -1.24
UPF3A-205ENST00000479712 DLX3O60479 287 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 VAMP4O75379 141 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 ZNF865P0CJ78 1059 aaPredicted RBP7.31□□□□□ -1.24
UPF3A-205ENST00000479712 MYCLP1P12525 358 aaPredicted RBP7.31□□□□□ -1.24
UPF3A-205ENST00000479712 HOXC12P31275 282 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 GFRA1P56159 465 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 AMPD3Q01432 767 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 CYP27A1Q02318 531 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 TNK2Q07912 1038 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 SF1Q15637 639 aaKnown RBP7.31□□□□□ -1.24
UPF3A-205ENST00000479712 CLEC16AQ2KHT3 1053 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 KRT26Q7Z3Y9 468 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 ARHGEF28Q8N1W1 1705 aaKnown RBP7.31□□□□□ -1.24
UPF3A-205ENST00000479712 FBXL6Q8N531 539 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 PIWIL2Q8TC59 973 aaKnown RBP7.31□□□□□ -1.24
UPF3A-205ENST00000479712 MFSD14AQ96MC6 490 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 CCDC140Q96MF4 163 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 STK32BQ9NY57 414 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 MINPP1Q9UNW1 487 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 CAPN6Q9Y6Q1 641 aa7.31□□□□□ -1.24
UPF3A-205ENST00000479712 ZFYVE9O95405 1425 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 MYO5BQ9ULV0 1848 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 KRTAP9-6A0A140TA67 174 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 SHISA3A0PJX4 238 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 FAM170BA6NMN3 283 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 ITIH2P19823 946 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 CNGA1P29973 690 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 POU4F1Q01851 419 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 MAP4K2Q12851 820 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 DPY19L1Q2PZI1 675 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 CWF19L1Q69YN2 538 aaKnown RBP7.3□□□□□ -1.24
UPF3A-205ENST00000479712 ZNF765Q7L2R6 523 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 THNSL2Q86YJ6 484 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 TMEM145Q8NBT3 493 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 HDAC8Q9BY41 377 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 CYP26B1Q9NR63 512 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 CFDP1Q9UEE9 299 aaPredicted RBP7.3□□□□□ -1.24
UPF3A-205ENST00000479712 NDOR1Q9UHB4 597 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 ADGRL2O95490 1459 aa7.3□□□□□ -1.24
UPF3A-205ENST00000479712 RIMS2Q9UQ26 1411 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 BLACEA4D250 179 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 FAM155AB1AL88 458 aaPredicted RBP7.29□□□□□ -1.24
UPF3A-205ENST00000479712 PDE8AO60658 829 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 CPP00450 1065 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 SCG5P05408 212 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 GSNP06396 782 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 C6orf222P0C671 652 aaPredicted RBP7.29□□□□□ -1.24
UPF3A-205ENST00000479712 ECI1P42126 302 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 GATA4P43694 442 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 LBX1P52954 281 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 GABREP78334 506 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 TRIM61Q5EBN2 209 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 CRTC3Q6UUV7 619 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 PRR23CQ6ZRP0 262 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 ARHGAP27Q6ZUM4 889 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 SHISA5Q8N114 240 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 ENOX1Q8TC92 643 aaKnown RBP7.29□□□□□ -1.24
UPF3A-205ENST00000479712 CHAC2Q8WUX2 184 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 GPR62Q9BZJ7 368 aa7.29□□□□□ -1.24
UPF3A-205ENST00000479712 XRN1Q8IZH2 1706 aaKnown RBP7.28□□□□□ -1.24
UPF3A-205ENST00000479712 A0A087X0B3 334 aa7.28□□□□□ -1.24
UPF3A-205ENST00000479712 STXBP3O00186 592 aa7.28□□□□□ -1.24
UPF3A-205ENST00000479712 CD3EP07766 207 aa7.28□□□□□ -1.24
UPF3A-205ENST00000479712 STAT3P40763 770 aa7.28□□□□□ -1.24
UPF3A-205ENST00000479712 CTSKP43235 329 aa7.28□□□□□ -1.24
UPF3A-205ENST00000479712 SCRN1Q12765 414 aa7.28□□□□□ -1.24
UPF3A-205ENST00000479712 SLC15A2Q16348 729 aa7.28□□□□□ -1.24
UPF3A-205ENST00000479712 PRSS53Q2L4Q9 553 aa7.28□□□□□ -1.24
UPF3A-205ENST00000479712 DUSP27Q5VZP5 1158 aa7.28□□□□□ -1.24
UPF3A-205ENST00000479712 DAGLBQ8NCG7 672 aa7.28□□□□□ -1.24
UPF3A-205ENST00000479712 SLC52A2Q9HAB3 445 aa7.28□□□□□ -1.24
UPF3A-205ENST00000479712 BTG4Q9NY30 223 aa7.28□□□□□ -1.24
UPF3A-205ENST00000479712 MAGEC2Q9UBF1 373 aaPredicted RBP7.28□□□□□ -1.24
UPF3A-205ENST00000479712 SPATA31A5Q5VU36 1347 aa7.27□□□□□ -1.24
UPF3A-205ENST00000479712 NPHP3Q7Z494 1330 aa7.27□□□□□ -1.24
UPF3A-205ENST00000479712 SPATA31A7Q8IWB4 1347 aa7.27□□□□□ -1.24
UPF3A-205ENST00000479712 EFCAB14O75071 495 aa7.27□□□□□ -1.25
UPF3A-205ENST00000479712 RAB11FIP3O75154 756 aa7.27□□□□□ -1.25
UPF3A-205ENST00000479712 SDSP20132 328 aa7.27□□□□□ -1.25
UPF3A-205ENST00000479712 SOX5P35711 763 aa7.27□□□□□ -1.25
UPF3A-205ENST00000479712 NTRK3Q16288 839 aa7.27□□□□□ -1.25
UPF3A-205ENST00000479712 SLC35F1Q5T1Q4 408 aa7.27□□□□□ -1.25
UPF3A-205ENST00000479712 RNF43Q68DV7 783 aa7.27□□□□□ -1.25
UPF3A-205ENST00000479712 USP53Q70EK8 1073 aa7.27□□□□□ -1.25
UPF3A-205ENST00000479712 BRAPQ7Z569 592 aa7.27□□□□□ -1.25
UPF3A-205ENST00000479712 C16orf71Q8IYS4 520 aaPredicted RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms