RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 NT5DC1Q5TFE4 455 aa20.45■□□□□ 0.87
CCDC88C-203ENST00000389856 SH3RF1Q7Z6J0 888 aa20.45■□□□□ 0.87
CCDC88C-203ENST00000389856 SPC24Q8NBT2 197 aa20.45■□□□□ 0.87
CCDC88C-203ENST00000389856 ERMNQ8TAM6 284 aa20.45■□□□□ 0.87
CCDC88C-203ENST00000389856 CLEC4DQ8WXI8 215 aa20.45■□□□□ 0.87
CCDC88C-203ENST00000389856 PAGE5Q96GU1 130 aa20.45■□□□□ 0.87
CCDC88C-203ENST00000389856 KCNH4Q9UQ05 1017 aa20.45■□□□□ 0.87
CCDC88C-203ENST00000389856 KDM3AQ9Y4C1 1321 aa20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 RLFQ13129 1914 aa20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 GTPBP6O43824 516 aaPredicted RBP20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 HOXA7P31268 230 aaPredicted RBP20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 AMPD3Q01432 767 aa20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 KARSQ15046 597 aaKnown RBP20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 PRR16Q569H4 304 aa20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 GADL1Q6ZQY3 521 aa20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 ZNF830Q96NB3 372 aaPredicted RBP20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 GSDMAQ96QA5 445 aa20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 LRRC27Q9C0I9 530 aa20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 KCNF1Q9H3M0 494 aa20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 RNF146Q9NTX7 359 aa20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 RMND1Q9NWS8 449 aa20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 STK17AQ9UEE5 414 aa20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 PCDHA5Q9Y5H7 936 aa20.45■□□□□ 0.86
CCDC88C-203ENST00000389856 IKBKBO14920 756 aa20.44■□□□□ 0.86
CCDC88C-203ENST00000389856 EDIL3O43854 480 aa20.44■□□□□ 0.86
CCDC88C-203ENST00000389856 IRX3P78415 501 aaPredicted RBP20.44■□□□□ 0.86
CCDC88C-203ENST00000389856 CT47A1Q5JQC4 288 aaPredicted RBP20.44■□□□□ 0.86
CCDC88C-203ENST00000389856 LDLRAD1Q5T700 205 aa20.44■□□□□ 0.86
CCDC88C-203ENST00000389856 SNRNP48Q6IEG0 339 aaKnown RBP20.44■□□□□ 0.86
CCDC88C-203ENST00000389856 PDXDC2PQ6P474 469 aa20.44■□□□□ 0.86
CCDC88C-203ENST00000389856 DLK2Q6UY11 383 aa20.44■□□□□ 0.86
CCDC88C-203ENST00000389856 RNF207Q6ZRF8 634 aa20.44■□□□□ 0.86
CCDC88C-203ENST00000389856 CCDC47Q96A33 483 aaKnown RBP20.44■□□□□ 0.86
CCDC88C-203ENST00000389856 GTPBP4Q9BZE4 634 aaKnown RBP20.44■□□□□ 0.86
CCDC88C-203ENST00000389856 NT5C3AQ9H0P0 336 aa20.44■□□□□ 0.86
CCDC88C-203ENST00000389856 A0A087X0B3 334 aa20.43■□□□□ 0.86
CCDC88C-203ENST00000389856 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.43■□□□□ 0.86
CCDC88C-203ENST00000389856 TAL1P17542 331 aaPredicted RBP20.43■□□□□ 0.86
CCDC88C-203ENST00000389856 HAUS3Q68CZ6 603 aa20.43■□□□□ 0.86
CCDC88C-203ENST00000389856 XRRA1Q6P2D8 792 aa20.43■□□□□ 0.86
CCDC88C-203ENST00000389856 CCDC186Q7Z3E2 898 aa20.43■□□□□ 0.86
CCDC88C-203ENST00000389856 REPS2Q8NFH8 660 aa20.43■□□□□ 0.86
CCDC88C-203ENST00000389856 HAS1Q92839 578 aa20.43■□□□□ 0.86
CCDC88C-203ENST00000389856 SLC10A4Q96EP9 437 aa20.43■□□□□ 0.86
CCDC88C-203ENST00000389856 COL11A1P12107 1806 aaPredicted RBP20.43■□□□□ 0.86
CCDC88C-203ENST00000389856 SPDYE16A6NNV3 312 aaPredicted RBP20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 NFIBO00712 420 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 IRF6O14896 467 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 COPB2P35606 906 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 AFMP43652 599 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 NIPA1Q7RTP0 329 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 MLKLQ8NB16 471 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 SNX29Q8TEQ0 813 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 OPTNQ96CV9 577 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 CLMNQ96JQ2 1002 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 P2RX7Q99572 595 aaKnown RBP20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 ACAD9Q9H845 621 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 HOMER2Q9NSB8 354 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 IMPACTQ9P2X3 320 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 FBXO40Q9UH90 709 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 AGTPBP1Q9UPW5 1226 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 SMCHD1A6NHR9 2005 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 UTRNP46939 3433 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 BIN1O00499 593 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 OSBPP22059 807 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 PTGS1P23219 599 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 STAT3P40763 770 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 GSDMDP57764 484 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 SNAPC2Q13487 334 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 CEP55Q53EZ4 464 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 DNTTIP2Q5QJE6 756 aaKnown RBP20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 MAP1SQ66K74 1059 aaPredicted RBP20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 KCTD17Q8N5Z5 321 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 AOPEPQ8N6M6 819 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 CHST13Q8NET6 341 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 SPATA20Q8TB22 786 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 ETNPPLQ8TBG4 499 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 TBC1D5Q92609 795 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 ERCC4Q92889 916 aaPredicted RBP20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 RRAGCQ9HB90 399 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 ZNF214Q9UL59 606 aaPredicted RBP20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 RPTORQ8N122 1335 aa20.42■□□□□ 0.86
CCDC88C-203ENST00000389856 PP2D1A8MPX8 630 aa20.41■□□□□ 0.86
CCDC88C-203ENST00000389856 PLCG1P19174 1290 aa20.41■□□□□ 0.86
CCDC88C-203ENST00000389856 CDC25AP30304 524 aa20.41■□□□□ 0.86
CCDC88C-203ENST00000389856 SARSP49591 514 aaKnown RBP20.41■□□□□ 0.86
CCDC88C-203ENST00000389856 LBX2Q6XYB7 198 aa20.41■□□□□ 0.86
CCDC88C-203ENST00000389856 SYTL5Q8TDW5 730 aaPredicted RBP20.41■□□□□ 0.86
CCDC88C-203ENST00000389856 A0A0G2JMZ2 1700 aa20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 FRMPD4Q14CM0 1322 aa20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 FAM86B1E9PN63 330 aa20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 DYNC1I1O14576 645 aa20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 FAM86B2P0C5J1 330 aa20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 DPYDQ12882 1025 aa20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 TMEM132BQ14DG7 1078 aa20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 DPCR1Q3MIW9 517 aa20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 MUM1L1Q5H9M0 696 aa20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 PCNX4Q63HM2 1172 aa20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 NSMFQ6X4W1 530 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 168 ms