RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 MAP3K15Q6ZN16 1313 aa17.33■□□□□ 0.36
COL17A1-202ENST00000369733 TRIM49BA6NDI0 452 aa17.33■□□□□ 0.36
COL17A1-202ENST00000369733 BRD2P25440 801 aaKnown RBP17.33■□□□□ 0.36
COL17A1-202ENST00000369733 ARL6IP4Q66PJ3 421 aaKnown RBP17.33■□□□□ 0.36
COL17A1-202ENST00000369733 CACNB1Q02641 598 aaPredicted RBP17.33■□□□□ 0.36
COL17A1-202ENST00000369733 RNASELQ05823 741 aaKnown RBP17.33■□□□□ 0.36
COL17A1-202ENST00000369733 MTF1Q14872 753 aa17.33■□□□□ 0.36
COL17A1-202ENST00000369733 GDAP1Q8TB36 358 aa17.33■□□□□ 0.36
COL17A1-202ENST00000369733 Q9H521 79 aa17.33■□□□□ 0.36
COL17A1-202ENST00000369733 CRCPO75575 148 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 PALMO75781 387 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 TMED2Q15363 201 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 TBCKQ8TEA7 893 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 ELAC2Q9BQ52 826 aaKnown RBP17.32■□□□□ 0.36
COL17A1-202ENST00000369733 NOP53Q9NZM5 478 aaKnown RBP17.32■□□□□ 0.36
COL17A1-202ENST00000369733 GFPT2O94808 682 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 BFSP1Q12934 665 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 SNX1Q13596 522 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 PPP2R5DQ14738 602 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 KAZNQ674X7 775 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 MIER3Q7Z3K6 550 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 GBP7Q8N8V2 638 aaPredicted RBP17.32■□□□□ 0.36
COL17A1-202ENST00000369733 GSDMBQ8TAX9 411 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 CCHCR1Q8TD31 782 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 COG1Q8WTW3 980 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 C6orf118Q5T5N4 469 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 SHC4Q6S5L8 630 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.32■□□□□ 0.36
COL17A1-202ENST00000369733 MLXIPQ9HAP2 919 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 MAP3K4Q9Y6R4 1608 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 DYNLL1P63167 89 aaKnown RBP17.32■□□□□ 0.36
COL17A1-202ENST00000369733 CYP4A11Q02928 519 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 SGO2Q562F6 1265 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 DPP8Q6V1X1 898 aaPredicted RBP17.32■□□□□ 0.36
COL17A1-202ENST00000369733 PIH1D3Q9NQM4 214 aaKnown RBP17.32■□□□□ 0.36
COL17A1-202ENST00000369733 C1orf112Q9NSG2 853 aa17.32■□□□□ 0.36
COL17A1-202ENST00000369733 TRIM66O15016 1216 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 HSPA6P17066 643 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 ADAMTS1Q9UHI8 967 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 PPP1R9AQ9ULJ8 1098 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 STK36Q9NRP7 1315 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 DAPK3O43293 454 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 COG7P83436 770 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 TRAPPC3LQ5T215 181 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.31■□□□□ 0.36
COL17A1-202ENST00000369733 CCT6BQ92526 530 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 PREX2Q70Z35 1606 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 IQGAP3Q86VI3 1631 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 MMEP08473 750 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 PSMC2P35998 433 aaKnown RBP17.31■□□□□ 0.36
COL17A1-202ENST00000369733 PABPC4Q13310 644 aaKnown RBP eCLIP17.31■□□□□ 0.36
COL17A1-202ENST00000369733 TAB3Q8N5C8 712 aaPredicted RBP17.31■□□□□ 0.36
COL17A1-202ENST00000369733 TBK1Q9UHD2 729 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 RABGAP1Q9Y3P9 1069 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 SERPINB6P35237 376 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 SNX16P57768 344 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 LRRC63Q05C16 580 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 ADCY2Q08462 1091 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 FAM102BQ5T8I3 360 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 NLRP14Q86W24 1093 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 TBC1D10CQ8IV04 446 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 SCOCQ9UIL1 159 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 ANAPC5Q9UJX4 755 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 USH1CQ9Y6N9 552 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 TCP10Q12799 353 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 PDE1CQ14123 709 aaPredicted RBP17.31■□□□□ 0.36
COL17A1-202ENST00000369733 EPHA10Q5JZY3 1008 aa17.31■□□□□ 0.36
COL17A1-202ENST00000369733 KIF28PB7ZC32 967 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 FOXN1O15353 648 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 PSMD2Q13200 908 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 CYP4F22Q6NT55 531 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 FAM186BQ8IYM0 893 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 OSBPL9Q96SU4 736 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 GCNT4Q9P109 453 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 POLR1AO95602 1720 aaPredicted RBP17.3■□□□□ 0.36
COL17A1-202ENST00000369733 CCDC188H7C350 402 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 ATP1A1P05023 1023 aaKnown RBP17.3■□□□□ 0.36
COL17A1-202ENST00000369733 ACTN3Q08043 901 aaPredicted RBP17.3■□□□□ 0.36
COL17A1-202ENST00000369733 NBPF9Q3BBW0 867 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 CYB5R4Q7L1T6 521 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 OTUD6AQ7L8S5 288 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 CCDC127Q96BQ5 260 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 IRX2Q9BZI1 471 aaPredicted RBP17.3■□□□□ 0.36
COL17A1-202ENST00000369733 GMNCA6NCL1 334 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 NSFP46459 744 aaKnown RBP17.3■□□□□ 0.36
COL17A1-202ENST00000369733 TSGA10IPQ3SY00 556 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 NFRKBQ6P4R8 1299 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 MB21D2Q8IYB1 491 aaPredicted RBP17.3■□□□□ 0.36
COL17A1-202ENST00000369733 RNF168Q8IYW5 571 aaPredicted RBP17.3■□□□□ 0.36
COL17A1-202ENST00000369733 LRRC7Q96NW7 1537 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 TARSL2A2RTX5 802 aaKnown RBP17.3■□□□□ 0.36
COL17A1-202ENST00000369733 PLEKHA8P1O95397 391 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 SETSIPP0DME0 302 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 PRCPP42785 496 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 LMNB2Q03252 620 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 PDCD7Q8N8D1 485 aaKnown RBP17.3■□□□□ 0.36
COL17A1-202ENST00000369733 TBC1D22AQ8WUA7 517 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 ZNF653Q96CK0 615 aa17.3■□□□□ 0.36
COL17A1-202ENST00000369733 RFX7Q2KHR2 1363 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 MYO1FO00160 1098 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms