RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ASCC2Q9H1I8 757 aaPredicted RBP25.5■■□□□ 1.67
CDX1-201ENST00000231656 ATP2A1O14983 1001 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 CFBP00751 764 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 HOXA13P31271 388 aaPredicted RBP25.49■■□□□ 1.67
CDX1-201ENST00000231656 TXLNAP40222 546 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 AP3B2Q13367 1082 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 MCTP2Q6DN12 878 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 POTEEQ6S8J3 1075 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 SAPCD2Q86UD0 394 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 CLEC4DQ8WXI8 215 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 DACH1Q9UI36 760 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 EDIL3O43854 480 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 NEMFO60524 1076 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 CETPP11597 493 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 PABPC4Q13310 644 aaKnown RBP eCLIP25.49■■□□□ 1.67
CDX1-201ENST00000231656 CCDC144BQ3MJ40 725 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 CCSER1Q9C0I3 900 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 HOMER2Q9NSB8 354 aa25.49■■□□□ 1.67
CDX1-201ENST00000231656 NFIBO00712 420 aa25.48■■□□□ 1.67
CDX1-201ENST00000231656 CASP1P29466 404 aa25.48■■□□□ 1.67
CDX1-201ENST00000231656 CDC25AP30304 524 aa25.48■■□□□ 1.67
CDX1-201ENST00000231656 GSDMAQ96QA5 445 aa25.48■■□□□ 1.67
CDX1-201ENST00000231656 MTRQ99707 1265 aa25.48■■□□□ 1.67
CDX1-201ENST00000231656 RIPK3Q9Y572 518 aa25.48■■□□□ 1.67
CDX1-201ENST00000231656 GCOM1H8Y6P7 765 aaPredicted RBP25.47■■□□□ 1.67
CDX1-201ENST00000231656 FOSP01100 380 aaPredicted RBP25.47■■□□□ 1.67
CDX1-201ENST00000231656 POLR2MP0CAP2 368 aa25.47■■□□□ 1.67
CDX1-201ENST00000231656 KARSQ15046 597 aaKnown RBP25.47■■□□□ 1.67
CDX1-201ENST00000231656 MUM1L1Q5H9M0 696 aa25.47■■□□□ 1.67
CDX1-201ENST00000231656 SNRNP48Q6IEG0 339 aaKnown RBP25.47■■□□□ 1.67
CDX1-201ENST00000231656 LBX2Q6XYB7 198 aa25.47■■□□□ 1.67
CDX1-201ENST00000231656 MB21D1Q8N884 522 aa25.47■■□□□ 1.67
CDX1-201ENST00000231656 TRERF1Q96PN7 1200 aa25.47■■□□□ 1.67
CDX1-201ENST00000231656 TEX13BQ9BXU2 312 aa25.47■■□□□ 1.67
CDX1-201ENST00000231656 ANO3Q9BYT9 981 aa25.47■■□□□ 1.67
CDX1-201ENST00000231656 DISC1Q9NRI5 854 aa25.47■■□□□ 1.67
CDX1-201ENST00000231656 RBBP6Q7Z6E9 1792 aaKnown RBP25.47■■□□□ 1.67
CDX1-201ENST00000231656 CCL15-CCL14A0A0B4J2E2 113 aa25.46■■□□□ 1.67
CDX1-201ENST00000231656 PP2D1A8MPX8 630 aa25.46■■□□□ 1.67
CDX1-201ENST00000231656 HERVK_113P62684 666 aa25.46■■□□□ 1.67
CDX1-201ENST00000231656 CCL15Q16663 113 aa25.46■■□□□ 1.67
CDX1-201ENST00000231656 AK8Q96MA6 479 aa25.46■■□□□ 1.67
CDX1-201ENST00000231656 IFNKQ9P0W0 207 aa25.46■■□□□ 1.67
CDX1-201ENST00000231656 SPDYE3A6NKU9 549 aa25.46■■□□□ 1.67
CDX1-201ENST00000231656 GTPBP6O43824 516 aaPredicted RBP25.46■■□□□ 1.67
CDX1-201ENST00000231656 TOMM70O94826 608 aa25.46■■□□□ 1.67
CDX1-201ENST00000231656 OSBPP22059 807 aa25.46■■□□□ 1.67
CDX1-201ENST00000231656 ZNF157P51786 506 aaPredicted RBP25.46■■□□□ 1.67
CDX1-201ENST00000231656 MCF2L2Q86YR7 1114 aa25.46■■□□□ 1.67
CDX1-201ENST00000231656 BRI3BPQ8WY22 251 aa25.46■■□□□ 1.67
CDX1-201ENST00000231656 XPO4Q9C0E2 1151 aaKnown RBP25.46■■□□□ 1.67
CDX1-201ENST00000231656 ATP1A3P13637 1013 aa25.45■■□□□ 1.66
CDX1-201ENST00000231656 STAT3P40763 770 aa25.45■■□□□ 1.66
CDX1-201ENST00000231656 STAT6P42226 847 aa25.45■■□□□ 1.66
CDX1-201ENST00000231656 HSD17B4P51659 736 aa25.45■■□□□ 1.66
CDX1-201ENST00000231656 FANCCQ00597 558 aa25.45■■□□□ 1.66
CDX1-201ENST00000231656 NAALADL2Q58DX5 795 aa25.45■■□□□ 1.66
CDX1-201ENST00000231656 CT47A1Q5JQC4 288 aaPredicted RBP25.45■■□□□ 1.66
CDX1-201ENST00000231656 STAMQ92783 540 aa25.45■■□□□ 1.66
CDX1-201ENST00000231656 BTBD7Q9P203 1132 aa25.45■■□□□ 1.66
CDX1-201ENST00000231656 PYCARDQ9ULZ3 195 aa25.45■■□□□ 1.66
CDX1-201ENST00000231656 UBA7P41226 1012 aa25.44■■□□□ 1.66
CDX1-201ENST00000231656 GHRHRQ02643 423 aa25.44■■□□□ 1.66
CDX1-201ENST00000231656 PLS1Q14651 629 aa25.44■■□□□ 1.66
CDX1-201ENST00000231656 FCHSD1Q86WN1 690 aa25.44■■□□□ 1.66
CDX1-201ENST00000231656 POTEDQ86YR6 584 aa25.44■■□□□ 1.66
CDX1-201ENST00000231656 RASAL3Q86YV0 1011 aa25.44■■□□□ 1.66
CDX1-201ENST00000231656 ENOX1Q8TC92 643 aaKnown RBP25.44■■□□□ 1.66
CDX1-201ENST00000231656 MTMR9Q96QG7 549 aa25.44■■□□□ 1.66
CDX1-201ENST00000231656 MED15Q96RN5 788 aa25.44■■□□□ 1.66
CDX1-201ENST00000231656 RNF146Q9NTX7 359 aa25.44■■□□□ 1.66
CDX1-201ENST00000231656 FANCLQ9NW38 375 aa25.44■■□□□ 1.66
CDX1-201ENST00000231656 OFD1O75665 1012 aa25.44■■□□□ 1.66
CDX1-201ENST00000231656 ERCC5P28715 1186 aaPredicted RBP25.44■■□□□ 1.66
CDX1-201ENST00000231656 KIAA1524Q8TCG1 905 aa25.44■■□□□ 1.66
CDX1-201ENST00000231656 TLL2Q9Y6L7 1015 aa25.44■■□□□ 1.66
CDX1-201ENST00000231656 BTBD19C9JJ37 291 aa25.43■■□□□ 1.66
CDX1-201ENST00000231656 PEX10O60683 326 aa25.43■■□□□ 1.66
CDX1-201ENST00000231656 CUL4BQ13620 913 aa25.43■■□□□ 1.66
CDX1-201ENST00000231656 RRAGBQ5VZM2 374 aa25.43■■□□□ 1.66
CDX1-201ENST00000231656 RGMBQ6NW40 437 aa25.43■■□□□ 1.66
CDX1-201ENST00000231656 CRYGNQ8WXF5 182 aa25.43■■□□□ 1.66
CDX1-201ENST00000231656 BLZF1Q9H2G9 400 aa25.43■■□□□ 1.66
CDX1-201ENST00000231656 SLC45A1Q9Y2W3 748 aa25.43■■□□□ 1.66
CDX1-201ENST00000231656 TDP2O95551 362 aa25.42■■□□□ 1.66
CDX1-201ENST00000231656 LRMPQ12912 555 aa25.42■■□□□ 1.66
CDX1-201ENST00000231656 TKFCQ3LXA3 575 aa25.42■■□□□ 1.66
CDX1-201ENST00000231656 SAMD3Q8N6K7 520 aa25.42■■□□□ 1.66
CDX1-201ENST00000231656 CACTINQ8WUQ7 758 aaKnown RBP25.42■■□□□ 1.66
CDX1-201ENST00000231656 PNMA3Q9UL41 463 aa25.42■■□□□ 1.66
CDX1-201ENST00000231656 PDHXO00330 501 aa25.41■■□□□ 1.66
CDX1-201ENST00000231656 SLC37A4O43826 429 aa25.41■■□□□ 1.66
CDX1-201ENST00000231656 SREBF1P36956 1147 aa25.41■■□□□ 1.66
CDX1-201ENST00000231656 USP11P51784 963 aa25.41■■□□□ 1.66
CDX1-201ENST00000231656 ANKRD23Q86SG2 305 aa25.41■■□□□ 1.66
CDX1-201ENST00000231656 IGSF22Q8N9C0 903 aa25.41■■□□□ 1.66
CDX1-201ENST00000231656 PAGR1Q9BTK6 254 aa25.41■■□□□ 1.66
CDX1-201ENST00000231656 MAP3K20Q9NYL2 800 aaKnown RBP25.41■■□□□ 1.66
CDX1-201ENST00000231656 CNMDO75829 334 aa25.41■■□□□ 1.66
CDX1-201ENST00000231656 CD44P16070 742 aaKnown RBP25.41■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms