RNA–Protein interactions for RNA: ENST00000574322.5

CTDNEP1-210, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-210ENST00000574322 TPM3P06753 285 aa32.06■■■□□ 2.72
CTDNEP1-210ENST00000574322 ERCC5P28715 1186 aaPredicted RBP32.06■■■□□ 2.72
CTDNEP1-210ENST00000574322 SUPT20HL1Q3ZLR7 823 aa32.06■■■□□ 2.72
CTDNEP1-210ENST00000574322 SCYL3Q8IZE3 742 aa32.06■■■□□ 2.72
CTDNEP1-210ENST00000574322 HAS1Q92839 578 aa32.06■■■□□ 2.72
CTDNEP1-210ENST00000574322 KIFC2Q96AC6 838 aa32.06■■■□□ 2.72
CTDNEP1-210ENST00000574322 HSD3B7Q9H2F3 369 aa32.06■■■□□ 2.72
CTDNEP1-210ENST00000574322 INPP5BP32019 993 aa32.05■■■□□ 2.72
CTDNEP1-210ENST00000574322 ZKSCAN5Q9Y2L8 839 aa32.05■■■□□ 2.72
CTDNEP1-210ENST00000574322 GOLGA6L6A8MZA4 724 aa32.04■■■□□ 2.72
CTDNEP1-210ENST00000574322 ARHGAP4P98171 946 aa32.04■■■□□ 2.72
CTDNEP1-210ENST00000574322 FMR1Q06787 632 aaKnown RBP eCLIP32.04■■■□□ 2.72
CTDNEP1-210ENST00000574322 KCNMB3Q9NPA1 279 aa32.04■■■□□ 2.72
CTDNEP1-210ENST00000574322 LRWD1Q9UFC0 647 aa32.04■■■□□ 2.72
CTDNEP1-210ENST00000574322 MRPL11Q9Y3B7 192 aaKnown RBP32.04■■■□□ 2.72
CTDNEP1-210ENST00000574322 SPDYE3A6NKU9 549 aa32.03■■■□□ 2.72
CTDNEP1-210ENST00000574322 CIITAP33076 1130 aa32.03■■■□□ 2.72
CTDNEP1-210ENST00000574322 USP14P54578 494 aa32.03■■■□□ 2.72
CTDNEP1-210ENST00000574322 ENOX1Q8TC92 643 aaKnown RBP32.03■■■□□ 2.72
CTDNEP1-210ENST00000574322 EIF2AK3Q9NZJ5 1116 aaKnown RBP32.03■■■□□ 2.72
CTDNEP1-210ENST00000574322 ABCB11O95342 1321 aa32.03■■■□□ 2.72
CTDNEP1-210ENST00000574322 CYP3A4P08684 503 aa32.03■■■□□ 2.72
CTDNEP1-210ENST00000574322 NF2P35240 595 aa32.03■■■□□ 2.72
CTDNEP1-210ENST00000574322 PRPF38AQ8NAV1 312 aaKnown RBP32.03■■■□□ 2.72
CTDNEP1-210ENST00000574322 RASSF8Q8NHQ8 419 aa32.03■■■□□ 2.72
CTDNEP1-210ENST00000574322 ZNF408Q9H9D4 720 aa32.03■■■□□ 2.72
CTDNEP1-210ENST00000574322 FBXO28Q9NVF7 368 aa32.03■■■□□ 2.72
CTDNEP1-210ENST00000574322 PLCG1P19174 1290 aa32.02■■■□□ 2.72
CTDNEP1-210ENST00000574322 CASP1P29466 404 aa32.02■■■□□ 2.72
CTDNEP1-210ENST00000574322 FSTL1Q12841 308 aa32.02■■■□□ 2.72
CTDNEP1-210ENST00000574322 CUL4BQ13620 913 aa32.02■■■□□ 2.72
CTDNEP1-210ENST00000574322 Q4G0T1 1027 aa32.02■■■□□ 2.72
CTDNEP1-210ENST00000574322 TTC12Q9H892 705 aaPredicted RBP32.02■■■□□ 2.72
CTDNEP1-210ENST00000574322 RRAGDQ9NQL2 400 aaPredicted RBP32.02■■■□□ 2.72
CTDNEP1-210ENST00000574322 RMND1Q9NWS8 449 aa32.02■■■□□ 2.72
CTDNEP1-210ENST00000574322 SMCHD1A6NHR9 2005 aa32.02■■■□□ 2.72
CTDNEP1-210ENST00000574322 TBX3O15119 743 aa32.01■■■□□ 2.72
CTDNEP1-210ENST00000574322 SLC26A4O43511 780 aa32.01■■■□□ 2.72
CTDNEP1-210ENST00000574322 STAMQ92783 540 aa32.01■■■□□ 2.72
CTDNEP1-210ENST00000574322 CALML4Q96GE6 196 aa32.01■■■□□ 2.72
CTDNEP1-210ENST00000574322 LRRC15Q8TF66 581 aa32■■■□□ 2.71
CTDNEP1-210ENST00000574322 SLF1Q9BQI6 1058 aa32■■■□□ 2.71
CTDNEP1-210ENST00000574322 AS3MTQ9HBK9 375 aa32■■■□□ 2.71
CTDNEP1-210ENST00000574322 ICAM1P05362 532 aa32■■■□□ 2.71
CTDNEP1-210ENST00000574322 CCDC174Q6PII3 467 aa32■■■□□ 2.71
CTDNEP1-210ENST00000574322 BLZF1Q9H2G9 400 aa32■■■□□ 2.71
CTDNEP1-210ENST00000574322 STK17AQ9UEE5 414 aa32■■■□□ 2.71
CTDNEP1-210ENST00000574322 KCNB1Q14721 858 aa31.99■■■□□ 2.71
CTDNEP1-210ENST00000574322 SLFN12Q8IYM2 578 aa31.99■■■□□ 2.71
CTDNEP1-210ENST00000574322 KLRG1Q96E93 195 aa31.99■■■□□ 2.71
CTDNEP1-210ENST00000574322 WRNIP1Q96S55 665 aa31.99■■■□□ 2.71
CTDNEP1-210ENST00000574322 EMILIN3Q9NT22 766 aa31.99■■■□□ 2.71
CTDNEP1-210ENST00000574322 SSC5DA1L4H1 1573 aa31.99■■■□□ 2.71
CTDNEP1-210ENST00000574322 GCOM1H8Y6P7 765 aaPredicted RBP31.98■■■□□ 2.71
CTDNEP1-210ENST00000574322 RPN1P04843 607 aaKnown RBP31.98■■■□□ 2.71
CTDNEP1-210ENST00000574322 POLR2MP0CAP2 368 aa31.98■■■□□ 2.71
CTDNEP1-210ENST00000574322 TAL1P17542 331 aaPredicted RBP31.98■■■□□ 2.71
CTDNEP1-210ENST00000574322 PTPRAP18433 802 aa31.98■■■□□ 2.71
CTDNEP1-210ENST00000574322 NOL9Q5SY16 702 aaKnown RBP31.98■■■□□ 2.71
CTDNEP1-210ENST00000574322 PCDHA12Q9UN75 941 aa31.98■■■□□ 2.71
CTDNEP1-210ENST00000574322 ZNF536O15090 1300 aa31.98■■■□□ 2.71
CTDNEP1-210ENST00000574322 PASKQ96RG2 1323 aa31.98■■■□□ 2.71
CTDNEP1-210ENST00000574322 CELF2O95319 508 aaKnown RBP31.97■■■□□ 2.71
CTDNEP1-210ENST00000574322 GRB10Q13322 594 aa31.97■■■□□ 2.71
CTDNEP1-210ENST00000574322 PRKG1Q13976 671 aa31.97■■■□□ 2.71
CTDNEP1-210ENST00000574322 PICK1Q9NRD5 415 aa31.97■■■□□ 2.71
CTDNEP1-210ENST00000574322 PPP1R3GB7ZBB8 358 aa31.97■■■□□ 2.71
CTDNEP1-210ENST00000574322 HOXA13P31271 388 aaPredicted RBP31.97■■■□□ 2.71
CTDNEP1-210ENST00000574322 BACE1P56817 501 aa31.97■■■□□ 2.71
CTDNEP1-210ENST00000574322 GHRHRQ02643 423 aa31.97■■■□□ 2.71
CTDNEP1-210ENST00000574322 KRT79Q5XKE5 535 aa31.97■■■□□ 2.71
CTDNEP1-210ENST00000574322 ETNPPLQ8TBG4 499 aa31.97■■■□□ 2.71
CTDNEP1-210ENST00000574322 LENG9Q96B70 501 aa31.97■■■□□ 2.71
CTDNEP1-210ENST00000574322 MED15Q96RN5 788 aa31.97■■■□□ 2.71
CTDNEP1-210ENST00000574322 PNMA2Q9UL42 364 aa31.97■■■□□ 2.71
CTDNEP1-210ENST00000574322 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP31.97■■■□□ 2.711e-7■□□□□ 8.6
CTDNEP1-210ENST00000574322 PHIPQ8WWQ0 1821 aa31.96■■■□□ 2.71
CTDNEP1-210ENST00000574322 FDX1P10109 184 aa31.96■■■□□ 2.71
CTDNEP1-210ENST00000574322 VCAM1P19320 739 aa31.96■■■□□ 2.71
CTDNEP1-210ENST00000574322 MSNP26038 577 aaKnown RBP31.96■■■□□ 2.71
CTDNEP1-210ENST00000574322 MTMR2Q13614 643 aa31.96■■■□□ 2.71
CTDNEP1-210ENST00000574322 HYIQ5T013 277 aa31.96■■■□□ 2.71
CTDNEP1-210ENST00000574322 ZNF658Q5TYW1 1059 aaPredicted RBP31.96■■■□□ 2.71
CTDNEP1-210ENST00000574322 SPC24Q8NBT2 197 aa31.96■■■□□ 2.71
CTDNEP1-210ENST00000574322 ZNF280CQ8ND82 737 aa31.96■■■□□ 2.71
CTDNEP1-210ENST00000574322 C12orf42Q96LP6 360 aa31.96■■■□□ 2.71
CTDNEP1-210ENST00000574322 PNMA5Q96PV4 448 aa31.96■■■□□ 2.71
CTDNEP1-210ENST00000574322 C7orf25Q9BPX7 421 aa31.96■■■□□ 2.71
CTDNEP1-210ENST00000574322 POTEMA6NI47 508 aa31.95■■■□□ 2.71
CTDNEP1-210ENST00000574322 PPP1R12BO60237 982 aaPredicted RBP31.95■■■□□ 2.71
CTDNEP1-210ENST00000574322 TMEM119Q4V9L6 283 aa31.95■■■□□ 2.71
CTDNEP1-210ENST00000574322 ZKSCAN4Q969J2 545 aaPredicted RBP31.95■■■□□ 2.71
CTDNEP1-210ENST00000574322 SLC38A10Q9HBR0 1119 aa31.95■■■□□ 2.71
CTDNEP1-210ENST00000574322 FANCLQ9NW38 375 aa31.95■■■□□ 2.71
CTDNEP1-210ENST00000574322 FZD1Q9UP38 647 aa31.95■■■□□ 2.71
CTDNEP1-210ENST00000574322 KLRC4O43908 158 aa31.95■■■□□ 2.7
CTDNEP1-210ENST00000574322 CD44P16070 742 aaKnown RBP31.95■■■□□ 2.7
CTDNEP1-210ENST00000574322 CLCN1P35523 988 aa31.95■■■□□ 2.7
CTDNEP1-210ENST00000574322 AMPD3Q01432 767 aa31.95■■■□□ 2.7
CTDNEP1-210ENST00000574322 SPP2Q13103 211 aa31.95■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 131.4 ms