RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 COPS5Q92905 334 aa10.67□□□□□ -0.7
VPS35-206ENST00000565228 RRP36Q96EU6 259 aaKnown RBP10.67□□□□□ -0.7
VPS35-206ENST00000565228 LZTS2Q9BRK4 669 aa10.67□□□□□ -0.7
VPS35-206ENST00000565228 BCAS3Q9H6U6 928 aa10.67□□□□□ -0.7
VPS35-206ENST00000565228 GJB4Q9NTQ9 266 aa10.67□□□□□ -0.7
VPS35-206ENST00000565228 DDX20Q9UHI6 824 aaKnown RBP10.67□□□□□ -0.7
VPS35-206ENST00000565228 MRPL11Q9Y3B7 192 aaKnown RBP10.67□□□□□ -0.7
VPS35-206ENST00000565228 TELO2Q9Y4R8 837 aa10.67□□□□□ -0.7
VPS35-206ENST00000565228 UNC80Q8N2C7 3258 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 SEPT4O43236 478 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 PFKFB2O60825 505 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 ADAMTS4O75173 837 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 SMPD1P17405 629 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 ADCYAP1R1P41586 468 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 GNAQP50148 359 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 NEK4P51957 841 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 ACVR2BQ13705 512 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 NPY5RQ15761 445 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 CCDC144BQ3MJ40 725 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 CCSAPQ6IQ19 270 aaPredicted RBP10.66□□□□□ -0.7
VPS35-206ENST00000565228 ZNF274Q96GC6 653 aaPredicted RBP10.66□□□□□ -0.7
VPS35-206ENST00000565228 PGBD1Q96JS3 809 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 TBC1D32Q96NH3 1257 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 PXMP2Q9NR77 195 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 RBM28Q9NW13 759 aaKnown RBP10.66□□□□□ -0.7
VPS35-206ENST00000565228 TMEM260Q9NX78 707 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 ZHX1Q9UKY1 873 aaPredicted RBP10.66□□□□□ -0.7
VPS35-206ENST00000565228 GNEQ9Y223 722 aaKnown RBP10.66□□□□□ -0.7
VPS35-206ENST00000565228 MYH7BA7E2Y1 1941 aa10.66□□□□□ -0.7
VPS35-206ENST00000565228 FRMPD4Q14CM0 1322 aa10.65□□□□□ -0.7
VPS35-206ENST00000565228 RBM47A0AV96 593 aaKnown RBP10.65□□□□□ -0.7
VPS35-206ENST00000565228 PRPF3O43395 683 aaKnown RBP10.65□□□□□ -0.7
VPS35-206ENST00000565228 JAK2O60674 1132 aa10.65□□□□□ -0.7
VPS35-206ENST00000565228 PGK1P00558 417 aa10.65□□□□□ -0.7
VPS35-206ENST00000565228 COL6A1P12109 1028 aa10.65□□□□□ -0.7
VPS35-206ENST00000565228 IFNAR1P17181 557 aa10.65□□□□□ -0.7
VPS35-206ENST00000565228 EIF2AK2P19525 551 aaKnown RBP10.65□□□□□ -0.7
VPS35-206ENST00000565228 CNGA1P29973 690 aa10.65□□□□□ -0.7
VPS35-206ENST00000565228 CLK2P49760 499 aaKnown RBP10.65□□□□□ -0.7
VPS35-206ENST00000565228 MRPS9P82933 396 aaKnown RBP10.65□□□□□ -0.7
VPS35-206ENST00000565228 FGD1P98174 961 aa10.65□□□□□ -0.7
VPS35-206ENST00000565228 SEMA3FQ13275 785 aa10.65□□□□□ -0.7
VPS35-206ENST00000565228 PFKFB3Q16875 520 aaPredicted RBP10.65□□□□□ -0.7
VPS35-206ENST00000565228 MSL3Q8N5Y2 521 aaKnown RBP10.65□□□□□ -0.7
VPS35-206ENST00000565228 TMEM106CQ9BVX2 250 aa10.65□□□□□ -0.7
VPS35-206ENST00000565228 SYNRGQ9UMZ2 1314 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 TFRCP02786 760 aaKnown RBP10.64□□□□□ -0.71
VPS35-206ENST00000565228 PGM5Q15124 567 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 LRRC41Q15345 812 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 CCDC62Q6P9F0 684 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 SYNE3Q6ZMZ3 975 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 HEATR3Q7Z4Q2 680 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 FCHSD1Q86WN1 690 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 KLHDC9Q8NEP7 349 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 RASGRP4Q8TDF6 673 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 PAWRQ96IZ0 340 aaKnown RBP10.64□□□□□ -0.71
VPS35-206ENST00000565228 RMDN3Q96TC7 470 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 PDCD2LQ9BRP1 358 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 SLC26A6Q9BXS9 759 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 BARHL2Q9NY43 387 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 SLC5A4Q9NY91 659 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 VPS54Q9P1Q0 977 aa10.64□□□□□ -0.71
VPS35-206ENST00000565228 LAMA3Q16787 3333 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 GCOM1H8Y6P7 765 aaPredicted RBP10.63□□□□□ -0.71
VPS35-206ENST00000565228 PIK3CDO00329 1044 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 NR3C2P08235 984 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 POLR2MP0CAP2 368 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 SCG2P13521 617 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 BEX3Q00994 111 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 SP2Q02086 613 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 MCF2L2Q86YR7 1114 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 NSUN7Q8NE18 718 aaKnown RBP10.63□□□□□ -0.71
VPS35-206ENST00000565228 DNERQ8NFT8 737 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 PPP1R13LQ8WUF5 828 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 CRYGNQ8WXF5 182 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 GTF3C6Q969F1 213 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 UPF3AQ9H1J1 476 aaKnown RBP10.63□□□□□ -0.71
VPS35-206ENST00000565228 ABHD16BQ9H3Z7 469 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 NRBP1Q9UHY1 535 aa10.63□□□□□ -0.71
VPS35-206ENST00000565228 SMCO2A6NFE2 343 aa10.62□□□□□ -0.71
VPS35-206ENST00000565228 ASB14A6NK59 587 aa10.62□□□□□ -0.71
VPS35-206ENST00000565228 M0R2N6 131 aa10.62□□□□□ -0.71
VPS35-206ENST00000565228 FARP2O94887 1054 aaPredicted RBP10.62□□□□□ -0.71
VPS35-206ENST00000565228 AKR1A1P14550 325 aa10.62□□□□□ -0.71
VPS35-206ENST00000565228 NKX3-2P78367 333 aa10.62□□□□□ -0.71
VPS35-206ENST00000565228 LY6KQ17RY6 165 aa10.62□□□□□ -0.71
VPS35-206ENST00000565228 EARS2Q5JPH6 523 aaKnown RBP10.62□□□□□ -0.71
VPS35-206ENST00000565228 HABP4Q5JVS0 413 aaKnown RBP10.62□□□□□ -0.71
VPS35-206ENST00000565228 VSIG10LQ86VR7 867 aa10.62□□□□□ -0.71
VPS35-206ENST00000565228 CYP2W1Q8TAV3 490 aa10.62□□□□□ -0.71
VPS35-206ENST00000565228 RNF26Q9BY78 433 aaPredicted RBP10.62□□□□□ -0.71
VPS35-206ENST00000565228 RIC8AQ9NPQ8 531 aa10.62□□□□□ -0.71
VPS35-206ENST00000565228 SEC63Q9UGP8 760 aaKnown RBP10.62□□□□□ -0.71
VPS35-206ENST00000565228 PNMA2Q9UL42 364 aa10.62□□□□□ -0.71
VPS35-206ENST00000565228 CNPY2Q9Y2B0 182 aa10.62□□□□□ -0.71
VPS35-206ENST00000565228 GRIN2DO15399 1336 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 VCANP13611 3396 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 SORBS3O60504 671 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 MYCLP12524 364 aaPredicted RBP10.61□□□□□ -0.71
VPS35-206ENST00000565228 ITGB5P18084 799 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms