RNA–Protein interactions for RNA: ENST00000543048.5

TNFRSF1A-214, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-214ENST00000543048 LIFRP42702 1097 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 ACLYP53396 1101 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 NKX3-2P78367 333 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 PDE4DQ08499 809 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 SNX17Q15036 470 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 C1orf53Q5VUE5 145 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 CCSAPQ6IQ19 270 aaPredicted RBP11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 NFXL1Q6ZNB6 911 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 EEPD1Q7L9B9 569 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 ZNF654Q8IZM8 581 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 SYTL5Q8TDW5 730 aaPredicted RBP11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 NUP133Q8WUM0 1156 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 NEK1Q96PY6 1258 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 LZTS2Q9BRK4 669 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 PRO3102Q9H379 93 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 GPHNQ9NQX3 736 aaPredicted RBP11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 RBM27Q9P2N5 1060 aaKnown RBP11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 GNEQ9Y223 722 aaKnown RBP11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 ATP11BQ9Y2G3 1177 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 BOLA1Q9Y3E2 137 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 PCDHA1Q9Y5I3 950 aa11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 DDX49Q9Y6V7 483 aaKnown RBP11.3□□□□□ -0.6
TNFRSF1A-214ENST00000543048 LRRC37A2A6NM11 1700 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 PNMA6FA0A0J9YX94 578 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 A0A1W2PQ45 241 aaPredicted RBP11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 A0A1W2PQY0 241 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 SH2B2O14492 632 aaPredicted RBP11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 DYNC1LI2O43237 492 aaPredicted RBP11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 DDAH1O94760 285 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 ASGR1P07306 291 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 CALM1P0DP23 149 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 CALM2P0DP24 149 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 CALM3P0DP25 149 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 KIF5BP33176 963 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 GNAQP50148 359 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 KRT32Q14532 448 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 SLC35G1Q2M3R5 365 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 DUSP28Q4G0W2 176 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 FBXO16Q8IX29 292 aaPredicted RBP11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 SAMD3Q8N6K7 520 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 CTCFLQ8NI51 663 aaPredicted RBP11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 NSUN6Q8TEA1 469 aaKnown RBP11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 VTI1AQ96AJ9 217 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 TAAR1Q96RJ0 339 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 PIGSQ96S52 555 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 IWS1Q96ST2 819 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 GDF15Q99988 308 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 WDR11Q9BZH6 1224 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 MAP3K20Q9NYL2 800 aaKnown RBP11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 PRKAG2Q9UGJ0 569 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 ELP1O95163 1332 aa11.29□□□□□ -0.6
TNFRSF1A-214ENST00000543048 A0A1W2PPC1 479 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 MYADML2A6NDP7 307 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 CTAGE5O15320 804 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 CYTH3O43739 400 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 ZEB2O60315 1214 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 PPP1R11O60927 126 aaPredicted RBP11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 CFBP00751 764 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 EDNRBP24530 442 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 MAGEA10P43363 369 aaPredicted RBP11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 EXOSC10Q01780 885 aaKnown RBP11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 TLE2Q04725 743 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 TRIM60Q495X7 471 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 SYNE3Q6ZMZ3 975 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 DHX32Q7L7V1 743 aaKnown RBP11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 HOMER1Q86YM7 354 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 KCNB2Q92953 911 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 GLT1D1Q96MS3 346 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 RMDN3Q96TC7 470 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 LRRC2Q9BYS8 371 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 STARD7Q9NQZ5 370 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 SLC12A7Q9Y666 1083 aa11.28□□□□□ -0.6
TNFRSF1A-214ENST00000543048 HMGB1P09429 215 aaKnown RBP11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 HSD17B4P51659 736 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 BEX3Q00994 111 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 GHRHRQ02643 423 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 COL9A3Q14050 684 aaPredicted RBP11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 STXBP2Q15833 593 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 FSCN1Q16658 493 aaKnown RBP11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 TMEM63BQ5T3F8 832 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 ARHGEF16Q5VV41 709 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 TLK2Q86UE8 772 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 SGMS1Q86VZ5 419 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 FANCBQ8NB91 859 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 SCFD2Q8WU76 684 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 RRP36Q96EU6 259 aaKnown RBP11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 TOX2Q96NM4 488 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 LBHD1Q9BQE6 289 aaPredicted RBP11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 MYL10Q9BUA6 226 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 SPZ1Q9BXG8 430 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 COL20A1Q9P218 1284 aa11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 RANBP2P49792 3224 aaKnown RBP11.27□□□□□ -0.61
TNFRSF1A-214ENST00000543048 DCDC2CA8MYV0 355 aa11.26□□□□□ -0.61
TNFRSF1A-214ENST00000543048 GCOM1H8Y6P7 765 aaPredicted RBP11.26□□□□□ -0.61
TNFRSF1A-214ENST00000543048 OPLAHO14841 1288 aa11.26□□□□□ -0.61
TNFRSF1A-214ENST00000543048 NKRFO15226 690 aaKnown RBP eCLIP11.26□□□□□ -0.61
TNFRSF1A-214ENST00000543048 EIF3JO75822 258 aaKnown RBP11.26□□□□□ -0.61
TNFRSF1A-214ENST00000543048 CABYRO75952 493 aa11.26□□□□□ -0.61
TNFRSF1A-214ENST00000543048 REC8O95072 547 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms