RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 MCF2L2Q86YR7 1114 aa15.17■□□□□ 0.02
CPSF1-204ENST00000529288 ANKS1AQ92625 1134 aa15.17■□□□□ 0.02
CPSF1-204ENST00000529288 SCLYQ96I15 445 aa15.17■□□□□ 0.02
CPSF1-204ENST00000529288 NOC4LQ9BVI4 516 aaKnown RBP15.17■□□□□ 0.02
CPSF1-204ENST00000529288 SEZ6LQ9BYH1 1024 aa15.17■□□□□ 0.02
CPSF1-204ENST00000529288 IL25Q9H293 177 aa15.17■□□□□ 0.02
CPSF1-204ENST00000529288 ALDH8A1Q9H2A2 487 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-204ENST00000529288 MTIF3Q9H2K0 278 aaKnown RBP15.17■□□□□ 0.02
CPSF1-204ENST00000529288 ZNF576Q9H609 170 aa15.17■□□□□ 0.02
CPSF1-204ENST00000529288 MRPL11Q9Y3B7 192 aaKnown RBP15.17■□□□□ 0.02
CPSF1-204ENST00000529288 TMEM265A0A087WTH1 108 aa15.16■□□□□ 0.02
CPSF1-204ENST00000529288 ZBBXA8MT70 800 aa15.16■□□□□ 0.02
CPSF1-204ENST00000529288 NKRFO15226 690 aaKnown RBP eCLIP15.16■□□□□ 0.02
CPSF1-204ENST00000529288 CFBP00751 764 aa15.16■□□□□ 0.02
CPSF1-204ENST00000529288 GSPT1P15170 499 aaKnown RBP15.16■□□□□ 0.02
CPSF1-204ENST00000529288 EDNRBP24530 442 aa15.16■□□□□ 0.02
CPSF1-204ENST00000529288 NBPF20Q3BBV1 942 aa15.16■□□□□ 0.02
CPSF1-204ENST00000529288 ARHGEF16Q5VV41 709 aa15.16■□□□□ 0.02
CPSF1-204ENST00000529288 CYB5R4Q7L1T6 521 aa15.16■□□□□ 0.02
CPSF1-204ENST00000529288 STAG2Q8N3U4 1231 aa15.16■□□□□ 0.02
CPSF1-204ENST00000529288 RGS22Q8NE09 1264 aa15.16■□□□□ 0.02
CPSF1-204ENST00000529288 SYTL5Q8TDW5 730 aaPredicted RBP15.16■□□□□ 0.02
CPSF1-204ENST00000529288 PPM1EQ8WY54 764 aa15.16■□□□□ 0.02
CPSF1-204ENST00000529288 PBX4Q9BYU1 374 aa15.16■□□□□ 0.02
CPSF1-204ENST00000529288 JMJD4Q9H9V9 463 aa15.16■□□□□ 0.02
CPSF1-204ENST00000529288 CXXC1Q9P0U4 656 aaPredicted RBP15.16■□□□□ 0.02
CPSF1-204ENST00000529288 MSRAQ9UJ68 235 aa15.16■□□□□ 0.02
CPSF1-204ENST00000529288 ARIH2O95376 493 aa15.15■□□□□ 0.02
CPSF1-204ENST00000529288 SUPT20HL2P0C7V6 817 aa15.15■□□□□ 0.02
CPSF1-204ENST00000529288 EIF2AK2P19525 551 aaKnown RBP15.15■□□□□ 0.02
CPSF1-204ENST00000529288 LY6KQ17RY6 165 aa15.15■□□□□ 0.02
CPSF1-204ENST00000529288 DEFB128Q7Z7B8 93 aa15.15■□□□□ 0.02
CPSF1-204ENST00000529288 RPUSD2Q8IZ73 545 aaKnown RBP15.15■□□□□ 0.02
CPSF1-204ENST00000529288 NSUN6Q8TEA1 469 aaKnown RBP15.15■□□□□ 0.02
CPSF1-204ENST00000529288 RUFY2Q8WXA3 655 aa15.15■□□□□ 0.02
CPSF1-204ENST00000529288 HERVK_113Q902F9 699 aa15.15■□□□□ 0.02
CPSF1-204ENST00000529288 RMDN3Q96TC7 470 aa15.15■□□□□ 0.02
CPSF1-204ENST00000529288 WNT8AQ9H1J5 351 aa15.15■□□□□ 0.02
CPSF1-204ENST00000529288 COL20A1Q9P218 1284 aa15.15■□□□□ 0.02
CPSF1-204ENST00000529288 NOD1Q9Y239 953 aa15.15■□□□□ 0.02
CPSF1-204ENST00000529288 KLRF2D3W0D1 207 aa15.14■□□□□ 0.01
CPSF1-204ENST00000529288 IFIT3O14879 490 aaKnown RBP15.14■□□□□ 0.01
CPSF1-204ENST00000529288 KPNA6O60684 536 aa15.14■□□□□ 0.01
CPSF1-204ENST00000529288 PTH1RQ03431 593 aa15.14■□□□□ 0.01
CPSF1-204ENST00000529288 STXBP2Q15833 593 aa15.14■□□□□ 0.01
CPSF1-204ENST00000529288 HOMER1Q86YM7 354 aa15.14■□□□□ 0.01
CPSF1-204ENST00000529288 AFG1LQ8WV93 481 aa15.14■□□□□ 0.01
CPSF1-204ENST00000529288 NKX2-4Q9H2Z4 354 aa15.14■□□□□ 0.01
CPSF1-204ENST00000529288 ERICH2A1L162 156 aa15.13■□□□□ 0.01
CPSF1-204ENST00000529288 LRRC37A2A6NM11 1700 aa15.13■□□□□ 0.01
CPSF1-204ENST00000529288 SORBS3O60504 671 aa15.13■□□□□ 0.01
CPSF1-204ENST00000529288 GH1P01241 217 aa15.13■□□□□ 0.01
CPSF1-204ENST00000529288 MYCLP12524 364 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-204ENST00000529288 RABGGTBP53611 331 aa15.13■□□□□ 0.01
CPSF1-204ENST00000529288 RAB30Q15771 203 aa15.13■□□□□ 0.01
CPSF1-204ENST00000529288 RASIP1Q5U651 963 aa15.13■□□□□ 0.01
CPSF1-204ENST00000529288 RALYLQ86SE5 291 aaKnown RBP15.13■□□□□ 0.01
CPSF1-204ENST00000529288 RETREG2Q8NC44 543 aa15.13■□□□□ 0.01
CPSF1-204ENST00000529288 GAS2L1Q99501 681 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-204ENST00000529288 AMNQ9BXJ7 453 aa15.13■□□□□ 0.01
CPSF1-204ENST00000529288 COL25A1Q9BXS0 654 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-204ENST00000529288 PRDM12Q9H4Q4 367 aa15.13■□□□□ 0.01
CPSF1-204ENST00000529288 SLC4A7Q9Y6M7 1214 aa15.13■□□□□ 0.01
CPSF1-204ENST00000529288 U3KPZ7 1027 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-204ENST00000529288 A6NJR5 290 aa15.12■□□□□ 0.01
CPSF1-204ENST00000529288 CHMLP26374 656 aa15.12■□□□□ 0.01
CPSF1-204ENST00000529288 SEC23AQ15436 765 aa15.12■□□□□ 0.01
CPSF1-204ENST00000529288 PIBF1Q8WXW3 757 aa15.12■□□□□ 0.01
CPSF1-204ENST00000529288 IWS1Q96ST2 819 aa15.12■□□□□ 0.01
CPSF1-204ENST00000529288 FTOQ9C0B1 505 aaKnown RBP eCLIP15.12■□□□□ 0.01
CPSF1-204ENST00000529288 SLC28A3Q9HAS3 691 aa15.12■□□□□ 0.01
CPSF1-204ENST00000529288 MAD2L2Q9UI95 211 aa15.12■□□□□ 0.01
CPSF1-204ENST00000529288 PCDHA1Q9Y5I3 950 aa15.12■□□□□ 0.01
CPSF1-204ENST00000529288 NR3C2P08235 984 aa15.11■□□□□ 0.01
CPSF1-204ENST00000529288 MMP3P08254 477 aa15.11■□□□□ 0.01
CPSF1-204ENST00000529288 CYP21A2P08686 494 aa15.11■□□□□ 0.01
CPSF1-204ENST00000529288 IGFBP4P22692 258 aa15.11■□□□□ 0.01
CPSF1-204ENST00000529288 HOXA13P31271 388 aaPredicted RBP15.11■□□□□ 0.01
CPSF1-204ENST00000529288 WTAPQ15007 396 aa15.11■□□□□ 0.01
CPSF1-204ENST00000529288 NFRKBQ6P4R8 1299 aa15.11■□□□□ 0.01
CPSF1-204ENST00000529288 CCDC62Q6P9F0 684 aa15.11■□□□□ 0.01
CPSF1-204ENST00000529288 ZFP91Q96JP5 570 aaPredicted RBP15.11■□□□□ 0.01
CPSF1-204ENST00000529288 PXMP2Q9NR77 195 aa15.11■□□□□ 0.01
CPSF1-204ENST00000529288 MRVI1Q9Y6F6 885 aa15.11■□□□□ 0.01
CPSF1-204ENST00000529288 A0A0C4DFX4 3053 aa15.11■□□□□ 0.01
CPSF1-204ENST00000529288 LCTP09848 1927 aa15.1■□□□□ 0.01
CPSF1-204ENST00000529288 ZBTB5O15062 677 aa15.1■□□□□ 0.01
CPSF1-204ENST00000529288 PPP1R11O60927 126 aaPredicted RBP15.1■□□□□ 0.01
CPSF1-204ENST00000529288 EIF3JO75822 258 aaKnown RBP15.1■□□□□ 0.01
CPSF1-204ENST00000529288 MYOGP15173 224 aa15.1■□□□□ 0.01
CPSF1-204ENST00000529288 CASTP20810 708 aaKnown RBP15.1■□□□□ 0.01
CPSF1-204ENST00000529288 ARHGAP1Q07960 439 aa15.1■□□□□ 0.01
CPSF1-204ENST00000529288 SART3Q15020 963 aaKnown RBP15.1■□□□□ 0.01
CPSF1-204ENST00000529288 CCDC85BQ15834 202 aaPredicted RBP15.1■□□□□ 0.01
CPSF1-204ENST00000529288 PTGISQ16647 500 aa15.1■□□□□ 0.01
CPSF1-204ENST00000529288 FCHSD1Q86WN1 690 aa15.1■□□□□ 0.01
CPSF1-204ENST00000529288 DHX37Q8IY37 1157 aaKnown RBP15.1■□□□□ 0.01
CPSF1-204ENST00000529288 NCOA7Q8NI08 942 aa15.1■□□□□ 0.01
CPSF1-204ENST00000529288 PIGSQ96S52 555 aa15.1■□□□□ 0.01
CPSF1-204ENST00000529288 ALG1Q9BT22 464 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms