RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 FAM177A1Q8N128 213 aaPredicted RBP17.14■□□□□ 0.33
NUP54-213ENST00000513352 MAML3Q96JK9 1138 aa17.14■□□□□ 0.33
NUP54-213ENST00000513352 MPHOSPH6Q99547 160 aaKnown RBP17.14■□□□□ 0.33
NUP54-213ENST00000513352 MAF1Q9H063 256 aa17.14■□□□□ 0.33
NUP54-213ENST00000513352 ADAMTS3O15072 1205 aa17.13■□□□□ 0.33
NUP54-213ENST00000513352 MMP1P03956 469 aa17.13■□□□□ 0.33
NUP54-213ENST00000513352 HOXC6P09630 235 aa17.13■□□□□ 0.33
NUP54-213ENST00000513352 XRCC5P13010 732 aaKnown RBP17.13■□□□□ 0.33
NUP54-213ENST00000513352 KRT2P35908 639 aa17.13■□□□□ 0.33
NUP54-213ENST00000513352 GHRHRQ02643 423 aa17.13■□□□□ 0.33
NUP54-213ENST00000513352 IRF5Q13568 498 aa17.13■□□□□ 0.33
NUP54-213ENST00000513352 GALNT17Q6IS24 598 aa17.13■□□□□ 0.33
NUP54-213ENST00000513352 DNERQ8NFT8 737 aa17.13■□□□□ 0.33
NUP54-213ENST00000513352 NSUN6Q8TEA1 469 aaKnown RBP17.13■□□□□ 0.33
NUP54-213ENST00000513352 PXMP2Q9NR77 195 aa17.13■□□□□ 0.33
NUP54-213ENST00000513352 PCDHA6Q9UN73 950 aa17.13■□□□□ 0.33
NUP54-213ENST00000513352 DIS3Q9Y2L1 958 aaKnown RBP17.13■□□□□ 0.33
NUP54-213ENST00000513352 PTPN22Q9Y2R2 807 aa17.13■□□□□ 0.33
NUP54-213ENST00000513352 PCDHA8Q9Y5H6 950 aa17.13■□□□□ 0.33
NUP54-213ENST00000513352 VPS37CA5D8V6 355 aaPredicted RBP17.12■□□□□ 0.33
NUP54-213ENST00000513352 ASB14A6NK59 587 aa17.12■□□□□ 0.33
NUP54-213ENST00000513352 B4DLN1 442 aa17.12■□□□□ 0.33
NUP54-213ENST00000513352 FOSP01100 380 aaPredicted RBP17.12■□□□□ 0.33
NUP54-213ENST00000513352 MYCLP12524 364 aaPredicted RBP17.12■□□□□ 0.33
NUP54-213ENST00000513352 PDCP20941 246 aa17.12■□□□□ 0.33
NUP54-213ENST00000513352 PDE4DQ08499 809 aa17.12■□□□□ 0.33
NUP54-213ENST00000513352 AP3B2Q13367 1082 aa17.12■□□□□ 0.33
NUP54-213ENST00000513352 MFSD14CQ5VZR4 134 aa17.12■□□□□ 0.33
NUP54-213ENST00000513352 MCTP1Q6DN14 999 aa17.12■□□□□ 0.33
NUP54-213ENST00000513352 DIS3L2Q8IYB7 885 aaKnown RBP17.12■□□□□ 0.33
NUP54-213ENST00000513352 TRMT44Q8IYL2 757 aaKnown RBP17.12■□□□□ 0.33
NUP54-213ENST00000513352 DAGLBQ8NCG7 672 aa17.12■□□□□ 0.33
NUP54-213ENST00000513352 SLAIN1Q8ND83 568 aa17.12■□□□□ 0.33
NUP54-213ENST00000513352 TRIB2Q92519 343 aa17.12■□□□□ 0.33
NUP54-213ENST00000513352 FGD4Q96M96 766 aa17.12■□□□□ 0.33
NUP54-213ENST00000513352 ANO3Q9BYT9 981 aa17.12■□□□□ 0.33
NUP54-213ENST00000513352 FLRT1Q9NZU1 646 aa17.12■□□□□ 0.33
NUP54-213ENST00000513352 RBM19Q9Y4C8 960 aaKnown RBP17.12■□□□□ 0.33
NUP54-213ENST00000513352 DDX49Q9Y6V7 483 aaKnown RBP17.12■□□□□ 0.33
NUP54-213ENST00000513352 GRK4P32298 578 aa17.11■□□□□ 0.33
NUP54-213ENST00000513352 PKN2Q16513 984 aaKnown RBP17.11■□□□□ 0.33
NUP54-213ENST00000513352 SLC9C1Q4G0N8 1177 aa17.11■□□□□ 0.33
NUP54-213ENST00000513352 OLFML2BQ68BL8 750 aa17.11■□□□□ 0.33
NUP54-213ENST00000513352 MCTP2Q6DN12 878 aa17.11■□□□□ 0.33
NUP54-213ENST00000513352 FBXO46Q6PJ61 603 aaPredicted RBP17.11■□□□□ 0.33
NUP54-213ENST00000513352 ARMCX2Q7L311 632 aa17.11■□□□□ 0.33
NUP54-213ENST00000513352 ZNF467Q7Z7K2 595 aaPredicted RBP17.11■□□□□ 0.33
NUP54-213ENST00000513352 FBXO18Q8NFZ0 1043 aa17.11■□□□□ 0.33
NUP54-213ENST00000513352 OXER1Q8TDS5 423 aa17.11■□□□□ 0.33
NUP54-213ENST00000513352 ASTN1O14525 1302 aa17.11■□□□□ 0.33
NUP54-213ENST00000513352 CCDC194A0A1B0GVG4 234 aa17.1■□□□□ 0.33
NUP54-213ENST00000513352 HMGCRP04035 888 aa17.1■□□□□ 0.33
NUP54-213ENST00000513352 CCND2P30279 289 aa17.1■□□□□ 0.33
NUP54-213ENST00000513352 CYP2C19P33261 490 aa17.1■□□□□ 0.33
NUP54-213ENST00000513352 CLK2P49760 499 aaKnown RBP17.1■□□□□ 0.33
NUP54-213ENST00000513352 NR5A1Q13285 461 aa17.1■□□□□ 0.33
NUP54-213ENST00000513352 NPY5RQ15761 445 aa17.1■□□□□ 0.33
NUP54-213ENST00000513352 EEPD1Q7L9B9 569 aa17.1■□□□□ 0.33
NUP54-213ENST00000513352 KRT25Q7Z3Z0 450 aa17.1■□□□□ 0.33
NUP54-213ENST00000513352 TEX2Q8IWB9 1127 aa17.1■□□□□ 0.33
NUP54-213ENST00000513352 SH3TC2Q8TF17 1288 aa17.1■□□□□ 0.33
NUP54-213ENST00000513352 PDCD2LQ9BRP1 358 aa17.1■□□□□ 0.33
NUP54-213ENST00000513352 TINF2Q9BSI4 451 aa17.1■□□□□ 0.33
NUP54-213ENST00000513352 MYH7BA7E2Y1 1941 aa17.09■□□□□ 0.33
NUP54-213ENST00000513352 BTBD18B2RXH4 712 aa17.09■□□□□ 0.33
NUP54-213ENST00000513352 NR3C2P08235 984 aa17.09■□□□□ 0.33
NUP54-213ENST00000513352 PGM5Q15124 567 aa17.09■□□□□ 0.33
NUP54-213ENST00000513352 NONOQ15233 471 aaKnown RBP eCLIP17.09■□□□□ 0.33
NUP54-213ENST00000513352 PIK3AP1Q6ZUJ8 805 aa17.09■□□□□ 0.33
NUP54-213ENST00000513352 IL31RAQ8NI17 732 aa17.09■□□□□ 0.33
NUP54-213ENST00000513352 PXYLP1Q8TE99 480 aa17.09■□□□□ 0.33
NUP54-213ENST00000513352 IWS1Q96ST2 819 aa17.09■□□□□ 0.33
NUP54-213ENST00000513352 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.09■□□□□ 0.33
NUP54-213ENST00000513352 ZHX1Q9UKY1 873 aaPredicted RBP17.09■□□□□ 0.33
NUP54-213ENST00000513352 CNPY2Q9Y2B0 182 aa17.09■□□□□ 0.33
NUP54-213ENST00000513352 SYNGAP1Q96PV0 1343 aa17.09■□□□□ 0.33
NUP54-213ENST00000513352 LRRC37A2A6NM11 1700 aa17.08■□□□□ 0.32
NUP54-213ENST00000513352 RPTORQ8N122 1335 aa17.08■□□□□ 0.32
NUP54-213ENST00000513352 MYCP01106 439 aaPredicted RBP17.08■□□□□ 0.32
NUP54-213ENST00000513352 INHAP05111 366 aa17.08■□□□□ 0.32
NUP54-213ENST00000513352 TRIM32Q13049 653 aa17.08■□□□□ 0.32
NUP54-213ENST00000513352 STXBP2Q15833 593 aa17.08■□□□□ 0.32
NUP54-213ENST00000513352 FBXO16Q8IX29 292 aaPredicted RBP17.08■□□□□ 0.32
NUP54-213ENST00000513352 MSL3Q8N5Y2 521 aaKnown RBP17.08■□□□□ 0.32
NUP54-213ENST00000513352 ZFP91Q96JP5 570 aaPredicted RBP17.08■□□□□ 0.32
NUP54-213ENST00000513352 FRMPD4Q14CM0 1322 aa17.07■□□□□ 0.32
NUP54-213ENST00000513352 LOC102724159A0A0B4J2E5 919 aa17.07■□□□□ 0.32
NUP54-213ENST00000513352 PRKAR2AP13861 404 aaKnown RBP17.07■□□□□ 0.32
NUP54-213ENST00000513352 SYT1P21579 422 aa17.07■□□□□ 0.32
NUP54-213ENST00000513352 CNGA1P29973 690 aa17.07■□□□□ 0.32
NUP54-213ENST00000513352 ZNF76P36508 570 aa17.07■□□□□ 0.32
NUP54-213ENST00000513352 SREBF1P36956 1147 aa17.07■□□□□ 0.32
NUP54-213ENST00000513352 ARHGAP4P98171 946 aa17.07■□□□□ 0.32
NUP54-213ENST00000513352 PWP2Q15269 919 aaKnown RBP17.07■□□□□ 0.32
NUP54-213ENST00000513352 PRAMEF19Q5SWL8 479 aa17.07■□□□□ 0.32
NUP54-213ENST00000513352 MAMDC4Q6UXC1 1216 aa17.07■□□□□ 0.32
NUP54-213ENST00000513352 TBCKQ8TEA7 893 aa17.07■□□□□ 0.32
NUP54-213ENST00000513352 MCOLN1Q9GZU1 580 aa17.07■□□□□ 0.32
NUP54-213ENST00000513352 M0R2N6 131 aa17.06■□□□□ 0.32
NUP54-213ENST00000513352 SNAI1O95863 264 aaPredicted RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms