RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 RGL1Q9NZL6 768 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 ADAM22Q9P0K1 906 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 AMACRQ9UHK6 382 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 CEP131Q9UPN4 1083 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 ACEP12821 1306 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 ABCC1P33527 1531 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 GOLGA6L10A0A0M3HER8 536 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 ERICH2A1L162 156 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 TMEM110-MUSTN1A8MSY1 372 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 ZBTB43O43298 467 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 PALMO75781 387 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 PTPREP23469 700 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 MCM7P33993 719 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 NLRP6P59044 892 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 PPP2R2AP63151 447 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 KRT83P78385 493 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 PTPN12Q05209 780 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 PAK1Q13153 545 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 BLMHQ13867 455 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 DIXDC1Q155Q3 683 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 COPS6Q7L5N1 327 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 TBC1D10CQ8IV04 446 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 MMGT1Q8N4V1 131 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 TTC8Q8TAM2 541 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 LPIN2Q92539 896 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 ABTB1Q969K4 478 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 PACSIN1Q9BY11 444 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 TAF1DQ9H5J8 278 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 DNAJC17Q9NVM6 304 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 CHCHD3Q9NX63 227 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 SLC12A6Q9UHW9 1150 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 CORO1CQ9ULV4 474 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 CPS1P31327 1500 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 ZFYVE9O95405 1425 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 HECW2Q9P2P5 1572 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 LRRD1A4D1F6 860 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 KCNK3O14649 394 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 CEP104O60308 925 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 UBTFL6P0CB48 400 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 EPB41P11171 864 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 NQO1P15559 274 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 VEGFAP15692 232 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 ATP2A2P16615 1042 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 ITGA6P23229 1130 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 ERCC5P28715 1186 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 MTIF2P46199 727 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 TMEM67Q5HYA8 995 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 KSR2Q6VAB6 950 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 ARMCX6Q7L4S7 300 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 ARMC9Q7Z3E5 817 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 NCOA7Q8NI08 942 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 FAM163AQ96GL9 167 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 RBM41Q96IZ5 413 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 CTAGE1Q96RT6 745 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 HAUS7Q99871 368 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 FGFR1OP2Q9NVK5 253 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 MROH2AA6NES4 1674 aa7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 RIMS1Q86UR5 1692 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-207ENST00000508466 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 ENTPD5O75356 428 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 CYLC1P35663 651 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 TUBB4BP68371 445 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 SSRP1Q08945 709 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 TCIRG1Q13488 830 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 PRPF4BQ13523 1007 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 ZNF449Q6P9G9 518 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 APOA5Q6Q788 366 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 SPATS2Q86XZ4 545 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 DTX3LQ8TDB6 740 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 XAGE3Q8WTP9 111 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 CHMP6Q96FZ7 201 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 PHF12Q96QT6 1004 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 GORASP1Q9BQQ3 440 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 ARHGAP20Q9P2F6 1191 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 PREX1Q8TCU6 1659 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 PRR36Q9H6K5 1346 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 ZCCHC11Q5TAX3 1644 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 MYO3AQ8NEV4 1616 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 NUTM2BA6NNL0 878 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 NUTM2EB1AL46 878 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 IDH1O75874 414 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 FMNL1O95466 1100 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 MYL1P05976 194 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 STAT6P42226 847 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 TRPM8Q7Z2W7 1104 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 FAM81AQ8TBF8 368 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 TRIM51Q9BSJ1 452 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 MOV10L1Q9BXT6 1211 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 MMADHCQ9H3L0 296 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 DDX21Q9NR30 783 aaKnown RBP eCLIP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 FAM217BQ9NTX9 383 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 LIMA1Q9UHB6 759 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 RTCBQ9Y3I0 505 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 NPATQ14207 1427 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 A0A087WZG4 1122 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 TTC36A6NLP5 189 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 SNAP23O00161 211 aa7.97□□□□□ -1.13
LIMCH1-207ENST00000508466 RNF113AO15541 343 aaKnown RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms