RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 FBXO28Q9NVF7 368 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 RMND1Q9NWS8 449 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 TMEM260Q9NX78 707 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 LRWD1Q9UFC0 647 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 TCEAL9Q9UHQ7 104 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 ADAMTS5Q9UNA0 930 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 BAZ2BQ9UIF8 2168 aaKnown RBP9.54□□□□□ -0.88
SF3A1-210ENST00000498259 KDM3AQ9Y4C1 1321 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 GOLGA6L19H0YKK7 550 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 MAFGO15525 162 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 STAM2O75886 525 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 CETPP11597 493 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 DEKP35659 375 aaKnown RBP9.53□□□□□ -0.88
SF3A1-210ENST00000498259 STAT6P42226 847 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 TXKP42681 527 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 HSD17B4P51659 736 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 GTF2A2P52657 109 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 POSTNQ15063 836 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 LDLRAD1Q5T700 205 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 GADL1Q6ZQY3 521 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 RNF207Q6ZRF8 634 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 NIPA1Q7RTP0 329 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 CCDC84Q86UT8 332 aaPredicted RBP9.53□□□□□ -0.88
SF3A1-210ENST00000498259 FCHSD1Q86WN1 690 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 CKAP2LQ8IYA6 745 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 CHST13Q8NET6 341 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 SMARCE1Q969G3 411 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 OPTNQ96CV9 577 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 OTUD5Q96G74 571 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 TRERF1Q96PN7 1200 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 MTMR9Q96QG7 549 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 TTC12Q9H892 705 aaPredicted RBP9.53□□□□□ -0.88
SF3A1-210ENST00000498259 RRAGCQ9HB90 399 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 BMP2KQ9NSY1 1161 aaPredicted RBP9.53□□□□□ -0.88
SF3A1-210ENST00000498259 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.53□□□□□ -0.88
SF3A1-210ENST00000498259 STK17AQ9UEE5 414 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 AGTPBP1Q9UPW5 1226 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 KCNH4Q9UQ05 1017 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 SLC45A1Q9Y2W3 748 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 ATAD5Q96QE3 1844 aa9.53□□□□□ -0.88
SF3A1-210ENST00000498259 SSC5DA1L4H1 1573 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 SMTNL1A8MU46 457 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 BECN2A8MW95 431 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 POTECB2RU33 542 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 IRF6O14896 467 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 SLC25A27O95847 323 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 STAT3P40763 770 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 PPP1R2P41236 205 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 TECP42680 631 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 SNAP25P60880 206 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 LONRF3Q496Y0 759 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 CEP55Q53EZ4 464 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 SNRNP48Q6IEG0 339 aaKnown RBP9.52□□□□□ -0.89
SF3A1-210ENST00000498259 LBX2Q6XYB7 198 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 CABP7Q86V35 215 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 IGSF22Q8N9C0 903 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 FAM200AQ8TCP9 573 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 DHX58Q96C10 678 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 CDHR1Q96JP9 859 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 AGBL1Q96MI9 1066 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 MBOAT7Q96N66 472 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 GSDMAQ96QA5 445 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 WDR11Q9BZH6 1224 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 ACAD9Q9H845 621 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 ZNF408Q9H9D4 720 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 GBA2Q9HCG7 927 aaPredicted RBP9.52□□□□□ -0.89
SF3A1-210ENST00000498259 RAVER2Q9HCJ3 691 aaKnown RBP9.52□□□□□ -0.89
SF3A1-210ENST00000498259 DISC1Q9NRI5 854 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 PFASO15067 1338 aa9.52□□□□□ -0.89
SF3A1-210ENST00000498259 TDP2O95551 362 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 ZBTB48P10074 688 aaPredicted RBP9.51□□□□□ -0.89
SF3A1-210ENST00000498259 BCRP11274 1271 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 MUTP22033 750 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 HOXA13P31271 388 aaPredicted RBP9.51□□□□□ -0.89
SF3A1-210ENST00000498259 ZNF165P49910 485 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 NLRP12P59046 1061 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 CCNA1P78396 465 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 PLS1Q14651 629 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 PRR16Q569H4 304 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 NOM1Q5C9Z4 860 aaKnown RBP9.51□□□□□ -0.89
SF3A1-210ENST00000498259 SPECC1Q5M775 1068 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 ARHGEF16Q5VV41 709 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 MAP1SQ66K74 1059 aaPredicted RBP9.51□□□□□ -0.89
SF3A1-210ENST00000498259 NLRX1Q86UT6 975 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 PDILTQ8N807 584 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 MLKLQ8NB16 471 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 NSUN6Q8TEA1 469 aaKnown RBP9.51□□□□□ -0.89
SF3A1-210ENST00000498259 ATG4CQ96DT6 458 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 EPSTI1Q96J88 318 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 BPIFA3Q9BQP9 254 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 RNF146Q9NTX7 359 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 ADD3Q9UEY8 706 aaKnown RBP9.51□□□□□ -0.89
SF3A1-210ENST00000498259 ZNF536O15090 1300 aa9.51□□□□□ -0.89
SF3A1-210ENST00000498259 CCND2P30279 289 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 STIM1Q13586 685 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 NT5DC1Q5TFE4 455 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 PCNX4Q63HM2 1172 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 CHADLQ6NUI6 762 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 NSMFQ6X4W1 530 aa9.5□□□□□ -0.89
SF3A1-210ENST00000498259 SV2BQ7L1I2 683 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms