RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 DUSP11O75319 330 aaKnown RBP12.29□□□□□ -0.44
UBR4-208ENST00000459947 CNGA1P29973 690 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 CYP2C19P33261 490 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 FLRT1Q9NZU1 646 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 KBTBD13C9JR72 458 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 KPNA6O60684 536 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 EIF3JO75822 258 aaKnown RBP12.29□□□□□ -0.44
UBR4-208ENST00000459947 SEC24BO95487 1268 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 CDC27P30260 824 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 SLC35G1Q2M3R5 365 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 RNF180Q86T96 592 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 SLC26A6Q9BXS9 759 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 AP5M1Q9H0R1 490 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 PPP1R11O60927 126 aaPredicted RBP12.28□□□□□ -0.44
UBR4-208ENST00000459947 FARP2O94887 1054 aaPredicted RBP12.28□□□□□ -0.44
UBR4-208ENST00000459947 ZNF865P0CJ78 1059 aaPredicted RBP12.28□□□□□ -0.44
UBR4-208ENST00000459947 NKX3-2P78367 333 aa12.28□□□□□ -0.44
UBR4-208ENST00000459947 CNTN2Q02246 1040 aa12.28□□□□□ -0.44
UBR4-208ENST00000459947 TTLL4Q14679 1199 aa12.28□□□□□ -0.44
UBR4-208ENST00000459947 NLRX1Q86UT6 975 aa12.28□□□□□ -0.44
UBR4-208ENST00000459947 GTF3C6Q969F1 213 aa12.28□□□□□ -0.44
UBR4-208ENST00000459947 FGD4Q96M96 766 aa12.28□□□□□ -0.44
UBR4-208ENST00000459947 DEFB118Q96PH6 123 aa12.28□□□□□ -0.44
UBR4-208ENST00000459947 BRMS1Q9HCU9 246 aa12.28□□□□□ -0.44
UBR4-208ENST00000459947 PXMP2Q9NR77 195 aa12.28□□□□□ -0.44
UBR4-208ENST00000459947 ADD1P35611 737 aaKnown RBP12.28□□□□□ -0.44
UBR4-208ENST00000459947 MTFR1Q15390 333 aa12.28□□□□□ -0.44
UBR4-208ENST00000459947 PCSK9Q8NBP7 692 aaKnown RBP12.28□□□□□ -0.44
UBR4-208ENST00000459947 NAP1L4Q99733 375 aaKnown RBP12.28□□□□□ -0.44
UBR4-208ENST00000459947 STXBP3O00186 592 aa12.28□□□□□ -0.44
UBR4-208ENST00000459947 SNAI1O95863 264 aaPredicted RBP12.28□□□□□ -0.44
UBR4-208ENST00000459947 NTRK3Q16288 839 aa12.28□□□□□ -0.44
UBR4-208ENST00000459947 UPF3AQ9H1J1 476 aaKnown RBP12.28□□□□□ -0.44
UBR4-208ENST00000459947 CST5P28325 142 aaPredicted RBP12.27□□□□□ -0.44
UBR4-208ENST00000459947 WWC2Q6AWC2 1192 aa12.27□□□□□ -0.44
UBR4-208ENST00000459947 NECAB2Q7Z6G3 386 aa12.27□□□□□ -0.44
UBR4-208ENST00000459947 RAB11FIP4Q86YS3 637 aa12.27□□□□□ -0.44
UBR4-208ENST00000459947 GIMAP8Q8ND71 665 aaPredicted RBP12.27□□□□□ -0.44
UBR4-208ENST00000459947 DNM1LO00429 736 aa12.27□□□□□ -0.45
UBR4-208ENST00000459947 CABYRO75952 493 aa12.27□□□□□ -0.45
UBR4-208ENST00000459947 TGFB3P10600 412 aa12.27□□□□□ -0.45
UBR4-208ENST00000459947 CCT2P78371 535 aaKnown RBP12.27□□□□□ -0.45
UBR4-208ENST00000459947 DAGLBQ8NCG7 672 aa12.27□□□□□ -0.45
UBR4-208ENST00000459947 PDCD2LQ9BRP1 358 aa12.27□□□□□ -0.45
UBR4-208ENST00000459947 MAFGO15525 162 aa12.27□□□□□ -0.45
UBR4-208ENST00000459947 NR3C2P08235 984 aa12.27□□□□□ -0.45
UBR4-208ENST00000459947 TNFAIP2Q03169 654 aa12.27□□□□□ -0.45
UBR4-208ENST00000459947 TRIM29Q14134 588 aa12.27□□□□□ -0.45
UBR4-208ENST00000459947 ZMYND12Q9H0C1 365 aa12.27□□□□□ -0.45
UBR4-208ENST00000459947 FRMPD3Q5JV73 1810 aa12.27□□□□□ -0.45
UBR4-208ENST00000459947 SMCO2A6NFE2 343 aa12.26□□□□□ -0.45
UBR4-208ENST00000459947 CCND3P30281 292 aaPredicted RBP12.26□□□□□ -0.45
UBR4-208ENST00000459947 TAAR1Q96RJ0 339 aa12.26□□□□□ -0.45
UBR4-208ENST00000459947 TPCN1Q9ULQ1 816 aa12.26□□□□□ -0.45
UBR4-208ENST00000459947 PCNX4Q63HM2 1172 aa12.26□□□□□ -0.45
UBR4-208ENST00000459947 PIBF1Q8WXW3 757 aa12.26□□□□□ -0.45
UBR4-208ENST00000459947 XPNPEP3Q9NQH7 507 aa12.26□□□□□ -0.45
UBR4-208ENST00000459947 POLR3EQ9NVU0 708 aa12.26□□□□□ -0.45
UBR4-208ENST00000459947 MOXD2PA6NHM9 499 aa12.26□□□□□ -0.45
UBR4-208ENST00000459947 DUSP28Q4G0W2 176 aa12.26□□□□□ -0.45
UBR4-208ENST00000459947 CCDC82Q8N4S0 544 aa12.26□□□□□ -0.45
UBR4-208ENST00000459947 LCTP09848 1927 aa12.26□□□□□ -0.45
UBR4-208ENST00000459947 SOX10P56693 466 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 GJA9P57773 515 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 TRIM32Q13049 653 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 NIPA1Q7RTP0 329 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 REXO1Q8N1G1 1221 aaKnown RBP12.25□□□□□ -0.45
UBR4-208ENST00000459947 GPRASP2Q96D09 838 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 OPLAHO14841 1288 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 NLRP5P59047 1200 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 SCRN1Q12765 414 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 COL9A3Q14050 684 aaPredicted RBP12.25□□□□□ -0.45
UBR4-208ENST00000459947 VSIG10LQ86VR7 867 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 TRPV1Q8NER1 839 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 KATNBL1Q9H079 304 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 ORC3Q9UBD5 711 aaPredicted RBP12.25□□□□□ -0.45
UBR4-208ENST00000459947 GH1P01241 217 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 ICAM3P32942 547 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 CPT1AP50416 773 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 PGM5Q15124 567 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 FCHSD1Q86WN1 690 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 C11orf49Q9H6J7 331 aa12.25□□□□□ -0.45
UBR4-208ENST00000459947 STK3Q13188 491 aa12.24□□□□□ -0.45
UBR4-208ENST00000459947 CCDC144BQ3MJ40 725 aa12.24□□□□□ -0.45
UBR4-208ENST00000459947 LHX8Q68G74 356 aa12.24□□□□□ -0.45
UBR4-208ENST00000459947 KRT25Q7Z3Z0 450 aa12.24□□□□□ -0.45
UBR4-208ENST00000459947 FIBPO43427 364 aa12.24□□□□□ -0.45
UBR4-208ENST00000459947 EIF2AK2P19525 551 aaKnown RBP12.24□□□□□ -0.45
UBR4-208ENST00000459947 SAFBQ15424 915 aaKnown RBP eCLIP12.24□□□□□ -0.45
UBR4-208ENST00000459947 CMTR1Q8N1G2 835 aaKnown RBP12.24□□□□□ -0.45
UBR4-208ENST00000459947 GPKOWQ92917 476 aaPredicted RBP eCLIP12.24□□□□□ -0.45
UBR4-208ENST00000459947 ANO3Q9BYT9 981 aa12.24□□□□□ -0.45
UBR4-208ENST00000459947 PCDHA6Q9UN73 950 aa12.24□□□□□ -0.45
UBR4-208ENST00000459947 PCDHA8Q9Y5H6 950 aa12.24□□□□□ -0.45
UBR4-208ENST00000459947 MEIS2O14770 477 aa12.24□□□□□ -0.45
UBR4-208ENST00000459947 NEDD9Q14511 834 aa12.24□□□□□ -0.45
UBR4-208ENST00000459947 NOL8Q76FK4 1167 aaKnown RBP12.24□□□□□ -0.45
UBR4-208ENST00000459947 NCOA5Q9HCD5 579 aaKnown RBP12.24□□□□□ -0.45
UBR4-208ENST00000459947 PCDHA4Q9UN74 947 aa12.24□□□□□ -0.45
UBR4-208ENST00000459947 PHF24Q9UPV7 400 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms