RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SLFN12Q8IYM2 578 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 EPSTI1Q96J88 318 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 CCSER1Q9C0I3 900 aa20.53■□□□□ 0.88
CCDC88C-203ENST00000389856 PARP14Q460N5 1801 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 BECN2A8MW95 431 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 CXCL11O14625 94 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 TBX3O15119 743 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 TDP2O95551 362 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 PDIA5Q14554 519 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 NOLC1Q14978 699 aaKnown RBP eCLIP20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 POSTNQ15063 836 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 POTEDQ86YR6 584 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 PDILTQ8N807 584 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 DHX58Q96C10 678 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 MTMR9Q96QG7 549 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 CUEDC2Q9H467 287 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 MAGEF1Q9HAY2 307 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 SERTAD1Q9UHV2 236 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 FZD1Q9UP38 647 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 STK24Q9Y6E0 443 aa20.52■□□□□ 0.88
CCDC88C-203ENST00000389856 VWA5AO00534 786 aa20.51■□□□□ 0.87
CCDC88C-203ENST00000389856 SLC26A4O43511 780 aa20.51■□□□□ 0.87
CCDC88C-203ENST00000389856 CYP3A4P08684 503 aa20.51■□□□□ 0.87
CCDC88C-203ENST00000389856 DSG3P32926 999 aa20.51■□□□□ 0.87
CCDC88C-203ENST00000389856 DHX8Q14562 1220 aaKnown RBP20.51■□□□□ 0.87
CCDC88C-203ENST00000389856 IL17AQ16552 155 aa20.51■□□□□ 0.87
CCDC88C-203ENST00000389856 CATSPERGQ6ZRH7 1159 aa20.51■□□□□ 0.87
CCDC88C-203ENST00000389856 CALML4Q96GE6 196 aa20.51■□□□□ 0.87
CCDC88C-203ENST00000389856 MBOAT7Q96N66 472 aa20.51■□□□□ 0.87
CCDC88C-203ENST00000389856 SPDYE5A6NIY4 337 aa20.5■□□□□ 0.87
CCDC88C-203ENST00000389856 OPLAHO14841 1288 aa20.5■□□□□ 0.87
CCDC88C-203ENST00000389856 ACTN4O43707 911 aaKnown RBP20.5■□□□□ 0.87
CCDC88C-203ENST00000389856 ZNF76P36508 570 aa20.5■□□□□ 0.87
CCDC88C-203ENST00000389856 TXKP42681 527 aa20.5■□□□□ 0.87
CCDC88C-203ENST00000389856 GHRHRQ02643 423 aa20.5■□□□□ 0.87
CCDC88C-203ENST00000389856 TKFCQ3LXA3 575 aa20.5■□□□□ 0.87
CCDC88C-203ENST00000389856 PROCA1Q8NCQ7 364 aaPredicted RBP20.5■□□□□ 0.87
CCDC88C-203ENST00000389856 TUBE1Q9UJT0 475 aa20.5■□□□□ 0.87
CCDC88C-203ENST00000389856 ZNF536O15090 1300 aa20.5■□□□□ 0.87
CCDC88C-203ENST00000389856 HOXA13P31271 388 aaPredicted RBP20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 CIITAP33076 1130 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 STAT6P42226 847 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 PPIL2Q13356 520 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 Q4G0T1 1027 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 RRAGBQ5VZM2 374 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 USP49Q70CQ1 688 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 CPXCR1Q8N123 301 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 IGSF22Q8N9C0 903 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 TRIML1Q8N9V2 468 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 KIAA1524Q8TCG1 905 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 CRYGNQ8WXF5 182 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 SMARCE1Q969G3 411 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 AGBL1Q96MI9 1066 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 TTC12Q9H892 705 aaPredicted RBP20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 DISC1Q9NRI5 854 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 SLC37A4O43826 429 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 MYL1P05976 194 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 ALAS1P13196 640 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 HSD17B4P51659 736 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 NLRP12P59046 1061 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 TPM4P67936 248 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 C11orf57Q6ZUT1 292 aaPredicted RBP20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 CABP7Q86V35 215 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 FCHSD1Q86WN1 690 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 ELP3Q9H9T3 547 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 RAVER2Q9HCJ3 691 aaKnown RBP20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 LRWD1Q9UFC0 647 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 DACH1Q9UI36 760 aa20.49■□□□□ 0.87
CCDC88C-203ENST00000389856 LOC285556D6RIA3 1793 aa20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 PTPRFP10586 1907 aa20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 POTECB2RU33 542 aa20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 ATP2A1O14983 1001 aa20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 TECP42680 631 aa20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 FKBP1BP68106 108 aa20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 PABPC4Q13310 644 aaKnown RBP eCLIP20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 KRT79Q5XKE5 535 aa20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 ATG4CQ96DT6 458 aa20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 CDK5RAP3Q96JB5 506 aa20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 PRIMPOLQ96LW4 560 aa20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 FAM20AQ96MK3 541 aa20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 PCDHA12Q9UN75 941 aa20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 ADAMTS5Q9UNA0 930 aa20.48■□□□□ 0.87
CCDC88C-203ENST00000389856 PNOCQ13519 176 aa20.47■□□□□ 0.87
CCDC88C-203ENST00000389856 DGKZQ13574 1117 aa20.47■□□□□ 0.87
CCDC88C-203ENST00000389856 DRC7Q8IY82 874 aa20.47■□□□□ 0.87
CCDC88C-203ENST00000389856 MB21D1Q8N884 522 aa20.47■□□□□ 0.87
CCDC88C-203ENST00000389856 OTUD5Q96G74 571 aa20.47■□□□□ 0.87
CCDC88C-203ENST00000389856 A0A0G2JLL6 359 aaPredicted RBP20.46■□□□□ 0.87
CCDC88C-203ENST00000389856 SMTNL1A8MU46 457 aa20.46■□□□□ 0.87
CCDC88C-203ENST00000389856 SETQ01105 290 aaPredicted RBP20.46■□□□□ 0.87
CCDC88C-203ENST00000389856 SEMA3FQ13275 785 aa20.46■□□□□ 0.87
CCDC88C-203ENST00000389856 FASTKD5Q7L8L6 764 aaKnown RBP20.46■□□□□ 0.87
CCDC88C-203ENST00000389856 PRRT2Q7Z6L0 340 aaPredicted RBP20.46■□□□□ 0.87
CCDC88C-203ENST00000389856 DHX40Q8IX18 779 aaKnown RBP20.46■□□□□ 0.87
CCDC88C-203ENST00000389856 TRERF1Q96PN7 1200 aa20.46■□□□□ 0.87
CCDC88C-203ENST00000389856 TEX13BQ9BXU2 312 aa20.46■□□□□ 0.87
CCDC88C-203ENST00000389856 KCNMB3Q9NPA1 279 aa20.46■□□□□ 0.87
CCDC88C-203ENST00000389856 R3HCC1Q9Y3T6 440 aaKnown RBP20.46■□□□□ 0.87
CCDC88C-203ENST00000389856 MDM2Q00987 491 aaPredicted RBP20.45■□□□□ 0.87
CCDC88C-203ENST00000389856 E2F4Q16254 413 aa20.45■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms