RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 PLA2G4DQ86XP0 818 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 DCPSQ96C86 337 aaKnown RBP15.55■□□□□ 0.08
PTPRF-202ENST00000372405 CCDC34Q96HJ3 373 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 WNK4Q96J92 1243 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 NUDT12Q9BQG2 462 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 AS3MTQ9HBK9 375 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 LRWD1Q9UFC0 647 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 MRPL11Q9Y3B7 192 aaKnown RBP15.55■□□□□ 0.08
PTPRF-202ENST00000372405 GTPBP6O43824 516 aaPredicted RBP15.55■□□□□ 0.08
PTPRF-202ENST00000372405 SMC2O95347 1197 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 HMGCS2P54868 508 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 SARM1Q6SZW1 724 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 TEX2Q8IWB9 1127 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 ETNPPLQ8TBG4 499 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 CLEC4DQ8WXI8 215 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 TRIM44Q96DX7 344 aaPredicted RBP15.55■□□□□ 0.08
PTPRF-202ENST00000372405 C12orf42Q96LP6 360 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 GSDMAQ96QA5 445 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 MED15Q96RN5 788 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 NAP1L4Q99733 375 aaKnown RBP15.55■□□□□ 0.08
PTPRF-202ENST00000372405 KBTBD4Q9NVX7 518 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 CCPG1Q9ULG6 757 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 AFG3L2Q9Y4W6 797 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 SNCAIPQ9Y6H5 919 aa15.55■□□□□ 0.08
PTPRF-202ENST00000372405 RBBP6Q7Z6E9 1792 aaKnown RBP15.54■□□□□ 0.08
PTPRF-202ENST00000372405 GCOM1H8Y6P7 765 aaPredicted RBP15.54■□□□□ 0.08
PTPRF-202ENST00000372405 IKBKBO14920 756 aa15.54■□□□□ 0.08
PTPRF-202ENST00000372405 CYP3A4P08684 503 aa15.54■□□□□ 0.08
PTPRF-202ENST00000372405 POLR2MP0CAP2 368 aa15.54■□□□□ 0.08
PTPRF-202ENST00000372405 CIITAP33076 1130 aa15.54■□□□□ 0.08
PTPRF-202ENST00000372405 ZNF75DP51815 510 aa15.54■□□□□ 0.08
PTPRF-202ENST00000372405 FMR1Q06787 632 aaKnown RBP eCLIP15.54■□□□□ 0.08
PTPRF-202ENST00000372405 GRB10Q13322 594 aa15.54■□□□□ 0.08
PTPRF-202ENST00000372405 VGLL4Q14135 290 aa15.54■□□□□ 0.08
PTPRF-202ENST00000372405 TMEM266Q2M3C6 531 aa15.54■□□□□ 0.08
PTPRF-202ENST00000372405 SULF1Q8IWU6 871 aa15.54■□□□□ 0.08
PTPRF-202ENST00000372405 RASSF8Q8NHQ8 419 aa15.54■□□□□ 0.08
PTPRF-202ENST00000372405 CYP2W1Q8TAV3 490 aa15.54■□□□□ 0.08
PTPRF-202ENST00000372405 PNMA5Q96PV4 448 aa15.54■□□□□ 0.08
PTPRF-202ENST00000372405 CCDC39Q9UFE4 941 aa15.54■□□□□ 0.08
PTPRF-202ENST00000372405 NFIBO00712 420 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 CD44P16070 742 aaKnown RBP15.53■□□□□ 0.08
PTPRF-202ENST00000372405 Q4G0T1 1027 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 PRR16Q569H4 304 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 DPY19L2Q6NUT2 758 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 KRT26Q7Z3Y9 468 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 MLKLQ8NB16 471 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 RAVER2Q9HCJ3 691 aaKnown RBP15.53■□□□□ 0.08
PTPRF-202ENST00000372405 EPHX2P34913 555 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 HSD17B4P51659 736 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 GPR162Q16538 588 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 CPXCR1Q8N123 301 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 ATG4CQ96DT6 458 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 TRIM5Q9C035 493 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 BLOC1S4Q9NUP1 217 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 PCDHA12Q9UN75 941 aa15.53■□□□□ 0.08
PTPRF-202ENST00000372405 SCN4AP35499 1836 aa15.52■□□□□ 0.08
PTPRF-202ENST00000372405 IGLV3-22A0A075B6J6 115 aa15.52■□□□□ 0.07
PTPRF-202ENST00000372405 C19orf81C9J6K1 198 aa15.52■□□□□ 0.07
PTPRF-202ENST00000372405 MYL5Q02045 173 aa15.52■□□□□ 0.07
PTPRF-202ENST00000372405 SPIRE1Q08AE8 756 aa15.52■□□□□ 0.07
PTPRF-202ENST00000372405 ECM1Q16610 540 aa15.52■□□□□ 0.07
PTPRF-202ENST00000372405 HS1BP3Q53T59 392 aa15.52■□□□□ 0.07
PTPRF-202ENST00000372405 USP50Q70EL3 339 aaPredicted RBP15.52■□□□□ 0.07
PTPRF-202ENST00000372405 SMYD4Q8IYR2 804 aaPredicted RBP15.52■□□□□ 0.07
PTPRF-202ENST00000372405 CNKSR2Q8WXI2 1034 aa15.52■□□□□ 0.07
PTPRF-202ENST00000372405 CUEDC2Q9H467 287 aa15.52■□□□□ 0.07
PTPRF-202ENST00000372405 COL20A1Q9P218 1284 aa15.52■□□□□ 0.07
PTPRF-202ENST00000372405 GLTPD2A6NH11 291 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 POTECB2RU33 542 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 VWA5AO00534 786 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 KLRC4O43908 158 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 RPN1P04843 607 aaKnown RBP15.51■□□□□ 0.07
PTPRF-202ENST00000372405 MAP3K9P80192 1104 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 GHRHRQ02643 423 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 MUM1L1Q5H9M0 696 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 REPS2Q8NFH8 660 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 RAB34Q9BZG1 259 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 SMTNL1A8MU46 457 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 PPP1R3GB7ZBB8 358 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 MSH4O15457 936 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 ALAS1P13196 640 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 STAT3P40763 770 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 UBXN2AP68543 259 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 TMEM119Q4V9L6 283 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 KCNK18Q7Z418 384 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 SNX29Q8TEQ0 813 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 CALML4Q96GE6 196 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.51■□□□□ 0.07
PTPRF-202ENST00000372405 ADAMTS5Q9UNA0 930 aa15.51■□□□□ 0.07
PTPRF-202ENST00000372405 TBX3O15119 743 aa15.5■□□□□ 0.07
PTPRF-202ENST00000372405 MARCH6O60337 910 aa15.5■□□□□ 0.07
PTPRF-202ENST00000372405 ATP1A3P13637 1013 aa15.5■□□□□ 0.07
PTPRF-202ENST00000372405 TRMT44Q8IYL2 757 aaKnown RBP15.5■□□□□ 0.07
PTPRF-202ENST00000372405 SPC24Q8NBT2 197 aa15.5■□□□□ 0.07
PTPRF-202ENST00000372405 CDCA5Q96FF9 252 aa15.5■□□□□ 0.07
PTPRF-202ENST00000372405 MAGEF1Q9HAY2 307 aa15.5■□□□□ 0.07
PTPRF-202ENST00000372405 HOMER2Q9NSB8 354 aa15.5■□□□□ 0.07
PTPRF-202ENST00000372405 SH3D19Q5HYK7 790 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 KRT79Q5XKE5 535 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms