RNA–Protein interactions for RNA: ENST00000353411.10

SKP1-202, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SKP1, Length 9,474 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-202ENST00000353411 PDXDC1Q6P996 788 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 CCNI2Q6ZMN8 369 aaPredicted RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 CCDC8Q9H0W5 538 aaPredicted RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 CIDEBQ9UHD4 219 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 SH3GLB1Q9Y371 365 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 N4BP1O75113 896 aaKnown RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 PPP6R2O75170 966 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 RAPGEF1Q13905 1077 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 HELBQ8NG08 1087 aaPredicted RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 LRGUKQ96M69 825 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 USP40Q9NVE5 1235 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 ZNF446Q9NWS9 450 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 LRCH1Q9Y2L9 728 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 SUPT3HO75486 399 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 FESP07332 822 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 HSPA6P17066 643 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 RTN1Q16799 776 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 PPP4R1Q8TF05 950 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 LTV1Q96GA3 475 aaPredicted RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 CCDC138Q96M89 665 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 SERPINI1Q99574 410 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 LRRC2Q9BYS8 371 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 ATP8A1Q9Y2Q0 1164 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 USP15Q9Y4E8 981 aaPredicted RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 ADGRG1Q9Y653 693 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 ABCC4O15439 1325 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 CPA1P15085 419 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 ZCWPW2Q504Y3 356 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 BZW1Q7L1Q6 419 aaKnown RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 TRMT44Q8IYL2 757 aaKnown RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 FUKQ8N0W3 1084 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 ARL10Q8N8L6 244 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 DDHD1Q8NEL9 900 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 TTLL11Q8NHH1 800 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 PRPF31Q8WWY3 499 aaKnown RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 TTC1Q99614 292 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 SEC63Q9UGP8 760 aaKnown RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 DBNLQ9UJU6 430 aaKnown RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 R3HDM2Q9Y2K5 976 aaKnown RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 H3BQF6 201 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 TBCAO75347 108 aaKnown RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 PDHBP11177 359 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 KRT5P13647 590 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 CALML3P27482 149 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 RAP1GDS1P52306 607 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 ARPC4P59998 168 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 COPS2P61201 443 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 FOXD4Q12950 439 aaPredicted RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 DRAXINQ8NBI3 349 aaPredicted RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.47□□□□□ -1.533e-6■■■■■ 28.6
SKP1-202ENST00000353411 OTUD7AQ8TE49 926 aaPredicted RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 RAB21Q9UL25 225 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 PALD1Q9ULE6 856 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 CHMP2AO43633 222 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 NQO1P15559 274 aaKnown RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 PAX3P23760 479 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 SKOR1P84550 965 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 AP1B1Q10567 949 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 BYSLQ13895 437 aaKnown RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 TRIM11Q96F44 468 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 ZNF274Q96GC6 653 aaPredicted RBP5.47□□□□□ -1.53
SKP1-202ENST00000353411 GSDMAQ96QA5 445 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 MAP2K7O14733 419 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 ATXN8OSP0DMR3 200 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 MCM7P33993 719 aa5.47□□□□□ -1.53
SKP1-202ENST00000353411 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.47□□□□□ -1.53
SKP1-202ENST00000353411 RIMBP3CA6NJZ7 1639 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 RIMBP3BA6NNM3 1639 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 RIMBP3Q9UFD9 1639 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 TRPA1O75762 1119 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 COPB1P53618 953 aaKnown RBP5.46□□□□□ -1.53
SKP1-202ENST00000353411 TBL3Q12788 808 aaKnown RBP5.46□□□□□ -1.53
SKP1-202ENST00000353411 GRAMD1BQ3KR37 738 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 NUDCD3Q8IVD9 361 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 DDI1Q8WTU0 396 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 BIN2Q9UBW5 565 aaPredicted RBP5.46□□□□□ -1.53
SKP1-202ENST00000353411 BZW2Q9Y6E2 419 aaKnown RBP5.46□□□□□ -1.53
SKP1-202ENST00000353411 TCOF1Q13428 1488 aaKnown RBP5.46□□□□□ -1.53
SKP1-202ENST00000353411 TSPOAP1O95153 1857 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 KRT8P05787 483 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 PPARDQ03181 441 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 THEMIS2Q5TEJ8 643 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 PODNQ7Z5L7 613 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 AFAP1L2Q8N4X5 818 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 AFAP1Q8N556 730 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 TRIM63Q969Q1 353 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 THAP11Q96EK4 314 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 ZFP69BQ9UJL9 534 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 ATP11BQ9Y2G3 1177 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 C2CD2Q9Y426 696 aa5.46□□□□□ -1.53
SKP1-202ENST00000353411 GNA14O95837 355 aa5.46□□□□□ -1.54
SKP1-202ENST00000353411 EVA1CP58658 441 aa5.46□□□□□ -1.54
SKP1-202ENST00000353411 MRPS15P82914 257 aaKnown RBP5.46□□□□□ -1.54
SKP1-202ENST00000353411 HDLBPQ00341 1268 aaKnown RBP5.46□□□□□ -1.54
SKP1-202ENST00000353411 SLC7A5Q01650 507 aa5.46□□□□□ -1.54
SKP1-202ENST00000353411 KLHL30Q0D2K2 578 aa5.46□□□□□ -1.54
SKP1-202ENST00000353411 DCLRE1BQ9H816 532 aa5.46□□□□□ -1.54
SKP1-202ENST00000353411 VWA3AA6NCI4 1184 aa5.46□□□□□ -1.54
SKP1-202ENST00000353411 GNAT3A8MTJ3 354 aa5.46□□□□□ -1.54
SKP1-202ENST00000353411 PSMC1P62191 440 aaKnown RBP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms