RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 KARSQ15046 597 aaKnown RBP20.48■□□□□ 0.87
VIM-201ENST00000224237 GRAMD1CQ8IYS0 662 aa20.48■□□□□ 0.87
VIM-201ENST00000224237 SPATA20Q8TB22 786 aa20.48■□□□□ 0.87
VIM-201ENST00000224237 AFG3L2Q9Y4W6 797 aa20.48■□□□□ 0.87
VIM-201ENST00000224237 CSADQ9Y600 493 aa20.48■□□□□ 0.87
VIM-201ENST00000224237 BECN2A8MW95 431 aa20.47■□□□□ 0.87
VIM-201ENST00000224237 NF2P35240 595 aa20.47■□□□□ 0.87
VIM-201ENST00000224237 AFMP43652 599 aa20.47■□□□□ 0.87
VIM-201ENST00000224237 PDIA5Q14554 519 aa20.47■□□□□ 0.87
VIM-201ENST00000224237 RRAGBQ5VZM2 374 aa20.47■□□□□ 0.87
VIM-201ENST00000224237 CABP7Q86V35 215 aa20.47■□□□□ 0.87
VIM-201ENST00000224237 FAM43AQ8N2R8 423 aa20.47■□□□□ 0.87
VIM-201ENST00000224237 EHMT1Q9H9B1 1298 aa20.47■□□□□ 0.87
VIM-201ENST00000224237 TMOD4Q9NZQ9 345 aa20.47■□□□□ 0.87
VIM-201ENST00000224237 IREB2P48200 963 aaKnown RBP20.47■□□□□ 0.87
VIM-201ENST00000224237 RBM46Q8TBY0 533 aaKnown RBP20.47■□□□□ 0.87
VIM-201ENST00000224237 AGBL1Q96MI9 1066 aa20.47■□□□□ 0.87
VIM-201ENST00000224237 CUEDC2Q9H467 287 aa20.47■□□□□ 0.87
VIM-201ENST00000224237 TTC12Q9H892 705 aaPredicted RBP20.47■□□□□ 0.87
VIM-201ENST00000224237 CTDP1Q9Y5B0 961 aaPredicted RBP20.47■□□□□ 0.87
VIM-201ENST00000224237 MARCH6O60337 910 aa20.46■□□□□ 0.87
VIM-201ENST00000224237 ZBED4O75132 1171 aa20.46■□□□□ 0.87
VIM-201ENST00000224237 CYP3A4P08684 503 aa20.46■□□□□ 0.87
VIM-201ENST00000224237 CIITAP33076 1130 aa20.46■□□□□ 0.87
VIM-201ENST00000224237 Q4G0T1 1027 aa20.46■□□□□ 0.87
VIM-201ENST00000224237 DHX40Q8IX18 779 aaKnown RBP20.46■□□□□ 0.87
VIM-201ENST00000224237 HAS1Q92839 578 aa20.46■□□□□ 0.87
VIM-201ENST00000224237 KCNMB3Q9NPA1 279 aa20.46■□□□□ 0.87
VIM-201ENST00000224237 LRWD1Q9UFC0 647 aa20.46■□□□□ 0.87
VIM-201ENST00000224237 MAN1B1Q9UKM7 699 aa20.46■□□□□ 0.87
VIM-201ENST00000224237 DPYDQ12882 1025 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 ISM2Q6H9L7 571 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 FCHSD1Q86WN1 690 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 SLFN12Q8IYM2 578 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 CLMNQ96JQ2 1002 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 MAGEF1Q9HAY2 307 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 TBX3O15119 743 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 PLCB2Q00722 1185 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 FMR1Q06787 632 aaKnown RBP eCLIP20.45■□□□□ 0.86
VIM-201ENST00000224237 NAALADL2Q58DX5 795 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 SH3D19Q5HYK7 790 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 PNMA8AQ86V59 439 aaPredicted RBP20.45■□□□□ 0.86
VIM-201ENST00000224237 MCF2L2Q86YR7 1114 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 CPXCR1Q8N123 301 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 TBC1D5Q92609 795 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 CALML4Q96GE6 196 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 GSDMAQ96QA5 445 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 PCDHA12Q9UN75 941 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 CLEC11AQ9Y240 323 aa20.45■□□□□ 0.86
VIM-201ENST00000224237 VWA5AO00534 786 aa20.44■□□□□ 0.86
VIM-201ENST00000224237 MORC3Q14149 939 aa20.44■□□□□ 0.86
VIM-201ENST00000224237 MAP1SQ66K74 1059 aaPredicted RBP20.44■□□□□ 0.86
VIM-201ENST00000224237 AOPEPQ8N6M6 819 aa20.44■□□□□ 0.86
VIM-201ENST00000224237 WNK4Q96J92 1243 aa20.44■□□□□ 0.86
VIM-201ENST00000224237 ELP3Q9H9T3 547 aa20.44■□□□□ 0.86
VIM-201ENST00000224237 RAVER2Q9HCJ3 691 aaKnown RBP20.44■□□□□ 0.86
VIM-201ENST00000224237 DACH1Q9UI36 760 aa20.44■□□□□ 0.86
VIM-201ENST00000224237 RBBP6Q7Z6E9 1792 aaKnown RBP20.44■□□□□ 0.86
VIM-201ENST00000224237 RLFQ13129 1914 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 POTEMA6NI47 508 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 GTPBP6O43824 516 aaPredicted RBP20.43■□□□□ 0.86
VIM-201ENST00000224237 ADCY5O95622 1261 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 MYL1P05976 194 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 PLCG1P19174 1290 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 HSD17B4P51659 736 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 GHRHRQ02643 423 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 TTLL12Q14166 644 aaPredicted RBP20.43■□□□□ 0.86
VIM-201ENST00000224237 PRR16Q569H4 304 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 SAMD3Q8N6K7 520 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 ATG4CQ96DT6 458 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 TRIM44Q96DX7 344 aaPredicted RBP20.43■□□□□ 0.86
VIM-201ENST00000224237 MMTAG2Q9BU76 263 aaKnown RBP20.43■□□□□ 0.86
VIM-201ENST00000224237 MAP3K20Q9NYL2 800 aaKnown RBP20.43■□□□□ 0.86
VIM-201ENST00000224237 TRAF5O00463 557 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 ALAS1P13196 640 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 DSG3P32926 999 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 ANKRD13AQ8IZ07 590 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 MLKLQ8NB16 471 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 CLEC4DQ8WXI8 215 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 MTRQ99707 1265 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 RABGAP1Q9Y3P9 1069 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 PTPRFP10586 1907 aa20.43■□□□□ 0.86
VIM-201ENST00000224237 SMTNL1A8MU46 457 aa20.42■□□□□ 0.86
VIM-201ENST00000224237 FAM86B1E9PN63 330 aa20.42■□□□□ 0.86
VIM-201ENST00000224237 FAM86B2P0C5J1 330 aa20.42■□□□□ 0.86
VIM-201ENST00000224237 BMP6P22004 513 aa20.42■□□□□ 0.86
VIM-201ENST00000224237 ZNF76P36508 570 aa20.42■□□□□ 0.86
VIM-201ENST00000224237 OAZ1P54368 228 aa20.42■□□□□ 0.86
VIM-201ENST00000224237 COG2Q14746 738 aa20.42■□□□□ 0.86
VIM-201ENST00000224237 KRT79Q5XKE5 535 aa20.42■□□□□ 0.86
VIM-201ENST00000224237 CATSPERGQ6ZRH7 1159 aa20.42■□□□□ 0.86
VIM-201ENST00000224237 ETNPPLQ8TBG4 499 aa20.42■□□□□ 0.86
VIM-201ENST00000224237 LENG9Q96B70 501 aa20.42■□□□□ 0.86
VIM-201ENST00000224237 KBTBD4Q9NVX7 518 aa20.42■□□□□ 0.86
VIM-201ENST00000224237 MYPNQ86TC9 1320 aa20.42■□□□□ 0.86
VIM-201ENST00000224237 NFIBO00712 420 aa20.41■□□□□ 0.86
VIM-201ENST00000224237 IKBKBO14920 756 aa20.41■□□□□ 0.86
VIM-201ENST00000224237 STAMQ92783 540 aa20.41■□□□□ 0.86
VIM-201ENST00000224237 OTUD5Q96G74 571 aa20.41■□□□□ 0.86
VIM-201ENST00000224237 CDK5RAP3Q96JB5 506 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms