RNA–Protein interactions for RNA: ENST00000611725.4

SNX13-213, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 6,817 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-213ENST00000611725 MRC2Q9UBG0 1479 aa8.56□□□□□ -1.04
SNX13-213ENST00000611725 IFT140Q96RY7 1462 aa8.55□□□□□ -1.04
SNX13-213ENST00000611725 NBPF8Q3BBV2 869 aa8.54□□□□□ -1.04
SNX13-213ENST00000611725 ST20-MTHFSA0A0A6YYL1 179 aa8.54□□□□□ -1.04
SNX13-213ENST00000611725 PTPRKQ15262 1439 aa8.54□□□□□ -1.04
SNX13-213ENST00000611725 ANKRD50Q9ULJ7 1429 aa8.54□□□□□ -1.04
SNX13-213ENST00000611725 KIF7Q2M1P5 1343 aa8.54□□□□□ -1.04
SNX13-213ENST00000611725 PRG4Q92954 1404 aaPredicted RBP8.54□□□□□ -1.04
SNX13-213ENST00000611725 TROQ12816 1431 aaPredicted RBP8.53□□□□□ -1.04
SNX13-213ENST00000611725 EPRSP07814 1512 aaKnown RBP8.53□□□□□ -1.04
SNX13-213ENST00000611725 ERICH6BQ5W0A0 696 aa8.53□□□□□ -1.04
SNX13-213ENST00000611725 CCDC7Q96M83 1385 aa8.53□□□□□ -1.04
SNX13-213ENST00000611725 CDCA8Q53HL2 280 aa8.53□□□□□ -1.04
SNX13-213ENST00000611725 PCF11O94913 1555 aaKnown RBP8.53□□□□□ -1.04
SNX13-213ENST00000611725 LAMC3Q9Y6N6 1575 aa8.53□□□□□ -1.04
SNX13-213ENST00000611725 DAXXQ9UER7 740 aaPredicted RBP8.52□□□□□ -1.04
SNX13-213ENST00000611725 KNSTRNQ9Y448 316 aa8.52□□□□□ -1.05
SNX13-213ENST00000611725 EHBP1L1Q8N3D4 1523 aa8.52□□□□□ -1.05
SNX13-213ENST00000611725 USP47Q96K76 1375 aa8.52□□□□□ -1.05
SNX13-213ENST00000611725 ANP32EQ9BTT0 268 aa8.51□□□□□ -1.05
SNX13-213ENST00000611725 WDR43Q15061 677 aaKnown RBP eCLIP8.51□□□□□ -1.05
SNX13-213ENST00000611725 KIF15Q9NS87 1388 aa8.51□□□□□ -1.05
SNX13-213ENST00000611725 MAPKBP1O60336 1514 aa8.51□□□□□ -1.05
SNX13-213ENST00000611725 B4GALNT3Q6L9W6 998 aa8.51□□□□□ -1.05
SNX13-213ENST00000611725 TMF1P82094 1093 aa8.51□□□□□ -1.05
SNX13-213ENST00000611725 ROCK2O75116 1388 aaKnown RBP8.51□□□□□ -1.05
SNX13-213ENST00000611725 ANP32AP39687 249 aaKnown RBP8.5□□□□□ -1.05
SNX13-213ENST00000611725 RTL5Q5HYW3 569 aaPredicted RBP8.5□□□□□ -1.05
SNX13-213ENST00000611725 ROCK1Q13464 1354 aa8.5□□□□□ -1.05
SNX13-213ENST00000611725 RBM19Q9Y4C8 960 aaKnown RBP8.5□□□□□ -1.05
SNX13-213ENST00000611725 WDR97A6NE52 1622 aa8.5□□□□□ -1.05
SNX13-213ENST00000611725 RALBP1Q15311 655 aa8.5□□□□□ -1.05
SNX13-213ENST00000611725 NLRP13Q86W25 1043 aa8.49□□□□□ -1.05
SNX13-213ENST00000611725 ANKRD30BQ9BXX2 1392 aa8.49□□□□□ -1.05
SNX13-213ENST00000611725 ZNF608Q9ULD9 1512 aaPredicted RBP8.49□□□□□ -1.05
SNX13-213ENST00000611725 CDK13Q14004 1512 aaKnown RBP8.48□□□□□ -1.05
SNX13-213ENST00000611725 CCDC144AA2RUR9 1427 aa8.48□□□□□ -1.05
SNX13-213ENST00000611725 ZBED9Q6R2W3 1325 aa8.48□□□□□ -1.05
SNX13-213ENST00000611725 AKNAQ7Z591 1439 aa8.48□□□□□ -1.05
SNX13-213ENST00000611725 SNAPC4Q5SXM2 1469 aa8.48□□□□□ -1.05
SNX13-213ENST00000611725 CC2D1BQ5T0F9 858 aaKnown RBP8.48□□□□□ -1.05
SNX13-213ENST00000611725 DAPK1P53355 1430 aa8.48□□□□□ -1.05
SNX13-213ENST00000611725 SPAG9O60271 1321 aaKnown RBP8.48□□□□□ -1.05
SNX13-213ENST00000611725 ARID4BQ4LE39 1312 aaPredicted RBP8.47□□□□□ -1.05
SNX13-213ENST00000611725 CNTLNQ9NXG0 1405 aa8.47□□□□□ -1.05
SNX13-213ENST00000611725 ABCC5O15440 1437 aa8.47□□□□□ -1.05
SNX13-213ENST00000611725 KTN1Q86UP2 1357 aaKnown RBP8.46□□□□□ -1.05
SNX13-213ENST00000611725 KIF3BO15066 747 aa8.46□□□□□ -1.06
SNX13-213ENST00000611725 CANXP27824 592 aaKnown RBP8.46□□□□□ -1.06
SNX13-213ENST00000611725 NUDCQ9Y266 331 aa8.46□□□□□ -1.06
SNX13-213ENST00000611725 C11orf95C9JLR9 678 aaPredicted RBP8.46□□□□□ -1.06
SNX13-213ENST00000611725 NCOA1Q15788 1441 aa8.45□□□□□ -1.06
SNX13-213ENST00000611725 KIAA1107Q9UPP5 1409 aa8.45□□□□□ -1.06
SNX13-213ENST00000611725 PLB1Q6P1J6 1458 aa8.45□□□□□ -1.06
SNX13-213ENST00000611725 SLC24A1O60721 1099 aa8.45□□□□□ -1.06
SNX13-213ENST00000611725 CCDC184Q52MB2 194 aa8.45□□□□□ -1.06
SNX13-213ENST00000611725 GRIN2AQ12879 1464 aa8.45□□□□□ -1.06
SNX13-213ENST00000611725 IQGAP2Q13576 1575 aa8.44□□□□□ -1.06
SNX13-213ENST00000611725 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.44□□□□□ -1.06
SNX13-213ENST00000611725 CUL7Q14999 1698 aa8.44□□□□□ -1.06
SNX13-213ENST00000611725 NPM2Q86SE8 214 aaKnown RBP8.44□□□□□ -1.06
SNX13-213ENST00000611725 KANK1Q14678 1352 aa8.43□□□□□ -1.06
SNX13-213ENST00000611725 MYBBP1AQ9BQG0 1328 aaKnown RBP8.43□□□□□ -1.06
SNX13-213ENST00000611725 GGT6Q6P531 493 aa8.42□□□□□ -1.06
SNX13-213ENST00000611725 STAG3Q9UJ98 1225 aa8.42□□□□□ -1.06
SNX13-213ENST00000611725 SYNJ2O15056 1496 aa8.42□□□□□ -1.06
SNX13-213ENST00000611725 C9orf84Q5VXU9 1444 aa8.42□□□□□ -1.06
SNX13-213ENST00000611725 AFAP1Q8N556 730 aa8.42□□□□□ -1.06
SNX13-213ENST00000611725 HECW1Q76N89 1606 aa8.41□□□□□ -1.06
SNX13-213ENST00000611725 PDE3BQ13370 1112 aa8.41□□□□□ -1.06
SNX13-213ENST00000611725 RPRD2Q5VT52 1461 aaKnown RBP8.41□□□□□ -1.06
SNX13-213ENST00000611725 RCAN3Q9UKA8 241 aa8.4□□□□□ -1.06
SNX13-213ENST00000611725 NBPF1Q3BBV0 1214 aa8.4□□□□□ -1.06
SNX13-213ENST00000611725 PANK3Q9H999 370 aa8.4□□□□□ -1.06
SNX13-213ENST00000611725 NUP153P49790 1475 aaKnown RBP8.4□□□□□ -1.06
SNX13-213ENST00000611725 NEFMP07197 916 aa8.4□□□□□ -1.06
SNX13-213ENST00000611725 MAGI1Q96QZ7 1491 aaPredicted RBP8.4□□□□□ -1.06
SNX13-213ENST00000611725 ZBTB47Q9UFB7 747 aaPredicted RBP8.4□□□□□ -1.07
SNX13-213ENST00000611725 PNISRQ8TF01 805 aaKnown RBP8.39□□□□□ -1.07
SNX13-213ENST00000611725 STAC3Q96MF2 364 aa8.39□□□□□ -1.07
SNX13-213ENST00000611725 UGGT2Q9NYU1 1516 aa8.39□□□□□ -1.07
SNX13-213ENST00000611725 ESF1Q9H501 851 aaKnown RBP8.38□□□□□ -1.07
SNX13-213ENST00000611725 THOC2Q8NI27 1593 aaKnown RBP8.38□□□□□ -1.07
SNX13-213ENST00000611725 PTPN23Q9H3S7 1636 aa8.38□□□□□ -1.07
SNX13-213ENST00000611725 GPATCH8Q9UKJ3 1502 aaKnown RBP8.38□□□□□ -1.07
SNX13-213ENST00000611725 TCOF1Q13428 1488 aaKnown RBP8.37□□□□□ -1.07
SNX13-213ENST00000611725 NEUROD2Q15784 382 aa8.37□□□□□ -1.07
SNX13-213ENST00000611725 CFAP53Q96M91 514 aa8.37□□□□□ -1.07
SNX13-213ENST00000611725 SENP3Q9H4L4 574 aaPredicted RBP8.37□□□□□ -1.07
SNX13-213ENST00000611725 FANCIQ9NVI1 1328 aa8.36□□□□□ -1.07
SNX13-213ENST00000611725 SUPT6HQ7KZ85 1726 aaKnown RBP8.36□□□□□ -1.07
SNX13-213ENST00000611725 TNNT2P45379 298 aaPredicted RBP8.36□□□□□ -1.07
SNX13-213ENST00000611725 WASHC2CQ9Y4E1 1318 aa8.36□□□□□ -1.07
SNX13-213ENST00000611725 CAMSAP2Q08AD1 1489 aa8.35□□□□□ -1.07
SNX13-213ENST00000611725 ARHGEF11O15085 1522 aa8.35□□□□□ -1.07
SNX13-213ENST00000611725 BRD4O60885 1362 aaPredicted RBP8.35□□□□□ -1.07
SNX13-213ENST00000611725 MORC1Q86VD1 984 aa8.34□□□□□ -1.07
SNX13-213ENST00000611725 EIF3AQ14152 1382 aaKnown RBP8.34□□□□□ -1.07
SNX13-213ENST00000611725 GOLGA2Q08379 1002 aa8.33□□□□□ -1.08
SNX13-213ENST00000611725 DISP1Q96F81 1524 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms