RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 ABCC5O15440 1437 aa26.74■■□□□ 1.87
COL9A3-205ENST00000466192 ZNF316A6NFI3 1004 aaPredicted RBP26.74■■□□□ 1.87
COL9A3-205ENST00000466192 DIEXFQ68CQ4 756 aaKnown RBP26.71■■□□□ 1.87
COL9A3-205ENST00000466192 KDM6BO15054 1643 aa26.69■■□□□ 1.86
COL9A3-205ENST00000466192 ROCK1Q13464 1354 aa26.66■■□□□ 1.86
COL9A3-205ENST00000466192 ZNF777Q9ULD5 760 aaPredicted RBP26.65■■□□□ 1.86
COL9A3-205ENST00000466192 CROCC2H7BZ55 1655 aa26.64■■□□□ 1.86
COL9A3-205ENST00000466192 UHRF1BP1LA0JNW5 1464 aa26.64■■□□□ 1.85
COL9A3-205ENST00000466192 ZCCHC11Q5TAX3 1644 aaKnown RBP26.63■■□□□ 1.85
COL9A3-205ENST00000466192 SIN3AQ96ST3 1273 aa26.61■■□□□ 1.85
COL9A3-205ENST00000466192 CDC42BPBQ9Y5S2 1711 aa26.61■■□□□ 1.85
COL9A3-205ENST00000466192 ADGBQ8N7X0 1667 aa26.61■■□□□ 1.85
COL9A3-205ENST00000466192 PREX2Q70Z35 1606 aa26.59■■□□□ 1.85
COL9A3-205ENST00000466192 KDM5BQ9UGL1 1544 aa26.57■■□□□ 1.84
COL9A3-205ENST00000466192 TTC37Q6PGP7 1564 aa26.57■■□□□ 1.84
COL9A3-205ENST00000466192 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.55■■□□□ 1.84
COL9A3-205ENST00000466192 NEUROD1Q13562 356 aa26.55■■□□□ 1.84
COL9A3-205ENST00000466192 ADGRL2O95490 1459 aa26.52■■□□□ 1.84
COL9A3-205ENST00000466192 NCOA1Q15788 1441 aa26.52■■□□□ 1.84
COL9A3-205ENST00000466192 OSCARQ8IYS5 282 aa26.51■■□□□ 1.84
COL9A3-205ENST00000466192 SAMD9LQ8IVG5 1584 aa26.51■■□□□ 1.83
COL9A3-205ENST00000466192 DENND4BO75064 1496 aaPredicted RBP26.51■■□□□ 1.83
COL9A3-205ENST00000466192 MYO5CQ9NQX4 1742 aa26.5■■□□□ 1.83
COL9A3-205ENST00000466192 TRIM52Q96A61 297 aa26.5■■□□□ 1.83
COL9A3-205ENST00000466192 ARHGEF5Q12774 1597 aa26.48■■□□□ 1.83
COL9A3-205ENST00000466192 SHANK2Q9UPX8 1470 aa26.47■■□□□ 1.83
COL9A3-205ENST00000466192 TIMELESSQ9UNS1 1208 aa26.46■■□□□ 1.83
COL9A3-205ENST00000466192 MBD5Q9P267 1494 aa26.45■■□□□ 1.82
COL9A3-205ENST00000466192 KCNH8Q96L42 1107 aa26.45■■□□□ 1.82
COL9A3-205ENST00000466192 ARHGAP5Q13017 1502 aa26.44■■□□□ 1.82
COL9A3-205ENST00000466192 ANKRD30AQ9BXX3 1397 aa26.43■■□□□ 1.82
COL9A3-205ENST00000466192 HNRNPMP52272 730 aaKnown RBP eCLIP26.43■■□□□ 1.82
COL9A3-205ENST00000466192 C9orf84Q5VXU9 1444 aa26.43■■□□□ 1.82
COL9A3-205ENST00000466192 MPHOSPH9Q99550 1183 aa26.41■■□□□ 1.82
COL9A3-205ENST00000466192 ACIN1Q9UKV3 1341 aaKnown RBP26.41■■□□□ 1.82
COL9A3-205ENST00000466192 CCDC141Q6ZP82 1450 aa26.37■■□□□ 1.81
COL9A3-205ENST00000466192 SYCP2Q9BX26 1530 aa26.37■■□□□ 1.81
COL9A3-205ENST00000466192 TSPY4P0CV99 314 aa26.36■■□□□ 1.81
COL9A3-205ENST00000466192 TSPY10P0CW01 314 aa26.36■■□□□ 1.81
COL9A3-205ENST00000466192 PELP1Q8IZL8 1130 aaKnown RBP26.34■■□□□ 1.81
COL9A3-205ENST00000466192 PLCH2O75038 1416 aa26.34■■□□□ 1.81
COL9A3-205ENST00000466192 TONSLQ96HA7 1378 aa26.34■■□□□ 1.81
COL9A3-205ENST00000466192 ANKRD50Q9ULJ7 1429 aa26.34■■□□□ 1.81
COL9A3-205ENST00000466192 PPP1R15AO75807 674 aaPredicted RBP26.33■■□□□ 1.81
COL9A3-205ENST00000466192 WDR7Q9Y4E6 1490 aa26.32■■□□□ 1.8
COL9A3-205ENST00000466192 RSPH4AQ5TD94 716 aa26.31■■□□□ 1.8
COL9A3-205ENST00000466192 PZPP20742 1482 aa26.3■■□□□ 1.8
COL9A3-205ENST00000466192 FOXD1Q16676 465 aa26.3■■□□□ 1.8
COL9A3-205ENST00000466192 PLEKHH2Q8IVE3 1493 aa26.29■■□□□ 1.8
COL9A3-205ENST00000466192 KIAA1107Q9UPP5 1409 aa26.29■■□□□ 1.8
COL9A3-205ENST00000466192 MAST1Q9Y2H9 1570 aa26.28■■□□□ 1.8
COL9A3-205ENST00000466192 SLC4A1APQ9BWU0 796 aaKnown RBP26.27■■□□□ 1.8
COL9A3-205ENST00000466192 KIF15Q9NS87 1388 aa26.27■■□□□ 1.8
COL9A3-205ENST00000466192 ARHGEF12Q9NZN5 1544 aa26.26■■□□□ 1.8
COL9A3-205ENST00000466192 ANKRD30BQ9BXX2 1392 aa26.24■■□□□ 1.79
COL9A3-205ENST00000466192 EFCAB2Q5VUJ9 269 aa26.23■■□□□ 1.79
COL9A3-205ENST00000466192 ARAP3Q8WWN8 1544 aa26.23■■□□□ 1.79
COL9A3-205ENST00000466192 ABCC1P33527 1531 aa26.23■■□□□ 1.79
COL9A3-205ENST00000466192 ABCA9Q8IUA7 1624 aa26.22■■□□□ 1.79
COL9A3-205ENST00000466192 ASXL2Q76L83 1435 aa26.22■■□□□ 1.79
COL9A3-205ENST00000466192 MIER1Q8N108 512 aa26.22■■□□□ 1.79
COL9A3-205ENST00000466192 PLXNC1O60486 1568 aa26.19■■□□□ 1.78
COL9A3-205ENST00000466192 KDM5DQ9BY66 1539 aa26.17■■□□□ 1.78
COL9A3-205ENST00000466192 RPRD2Q5VT52 1461 aaKnown RBP26.16■■□□□ 1.78
COL9A3-205ENST00000466192 NUP155O75694 1391 aa26.15■■□□□ 1.78
COL9A3-205ENST00000466192 TRAPPC8Q9Y2L5 1435 aa26.13■■□□□ 1.77
COL9A3-205ENST00000466192 NPM1P06748 294 aaKnown RBP eCLIP26.12■■□□□ 1.77
COL9A3-205ENST00000466192 PKD2Q13563 968 aa26.11■■□□□ 1.77
COL9A3-205ENST00000466192 FANCAO15360 1455 aa26.1■■□□□ 1.77
COL9A3-205ENST00000466192 L3MBTL2Q969R5 705 aa26.07■■□□□ 1.76
COL9A3-205ENST00000466192 UNC13BO14795 1591 aa26.07■■□□□ 1.76
COL9A3-205ENST00000466192 TEX14Q8IWB6 1497 aa26.07■■□□□ 1.76
COL9A3-205ENST00000466192 DUOX2Q9NRD8 1548 aa26.06■■□□□ 1.76
COL9A3-205ENST00000466192 FAM135AQ9P2D6 1515 aa26.03■■□□□ 1.76
COL9A3-205ENST00000466192 AFAP1Q8N556 730 aa26.02■■□□□ 1.76
COL9A3-205ENST00000466192 ZFYVE16Q7Z3T8 1539 aa26.01■■□□□ 1.75
COL9A3-205ENST00000466192 ADGRL1O94910 1474 aa25.99■■□□□ 1.75
COL9A3-205ENST00000466192 ERBINQ96RT1 1412 aa25.99■■□□□ 1.75
COL9A3-205ENST00000466192 SPAG9O60271 1321 aaKnown RBP25.99■■□□□ 1.75
COL9A3-205ENST00000466192 HIRIP3Q9BW71 556 aaPredicted RBP25.99■■□□□ 1.75
COL9A3-205ENST00000466192 RTEL1-TNFRSF6BF6WH68 1400 aa25.99■■□□□ 1.75
COL9A3-205ENST00000466192 IQGAP3Q86VI3 1631 aa25.97■■□□□ 1.75
COL9A3-205ENST00000466192 INO80Q9ULG1 1556 aaPredicted RBP25.96■■□□□ 1.75
COL9A3-205ENST00000466192 SCAPERQ9BY12 1400 aa25.96■■□□□ 1.75
COL9A3-205ENST00000466192 YTHDC1Q96MU7 727 aaKnown RBP25.96■■□□□ 1.75
COL9A3-205ENST00000466192 RIMBP3CA6NJZ7 1639 aa25.95■■□□□ 1.75
COL9A3-205ENST00000466192 RIMBP3BA6NNM3 1639 aa25.95■■□□□ 1.75
COL9A3-205ENST00000466192 RIMBP3Q9UFD9 1639 aa25.95■■□□□ 1.75
COL9A3-205ENST00000466192 CENPBP07199 599 aaPredicted RBP25.95■■□□□ 1.74
COL9A3-205ENST00000466192 MAGI2Q86UL8 1455 aa25.94■■□□□ 1.74
COL9A3-205ENST00000466192 ATP7AQ04656 1500 aa25.93■■□□□ 1.74
COL9A3-205ENST00000466192 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.92■■□□□ 1.741e-6■□□□□ 8.7
COL9A3-205ENST00000466192 CD109Q6YHK3 1445 aa25.92■■□□□ 1.74
COL9A3-205ENST00000466192 NBPF8Q3BBV2 869 aa25.9■■□□□ 1.74
COL9A3-205ENST00000466192 CYB5RLQ6IPT4 315 aa25.89■■□□□ 1.74
COL9A3-205ENST00000466192 CFAP74Q9C0B2 1584 aa25.89■■□□□ 1.74
COL9A3-205ENST00000466192 KIDINS220Q9ULH0 1771 aa25.85■■□□□ 1.73
COL9A3-205ENST00000466192 DDX10Q13206 875 aaKnown RBP25.84■■□□□ 1.73
COL9A3-205ENST00000466192 SCAF1Q9H7N4 1312 aaKnown RBP25.84■■□□□ 1.73
COL9A3-205ENST00000466192 DEPDC5O75140 1603 aa25.83■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms