RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 DCTN1Q14203 1278 aa7.72□□□□□ -1.17
VCAN-203ENST00000343200 TPM2P07951 284 aa7.72□□□□□ -1.17
VCAN-203ENST00000343200 AK7Q96M32 723 aa7.72□□□□□ -1.17
VCAN-203ENST00000343200 PDE4CQ08493 712 aa7.72□□□□□ -1.17
VCAN-203ENST00000343200 INCENPQ9NQS7 918 aa7.72□□□□□ -1.17
VCAN-203ENST00000343200 KCNJ4P48050 445 aa7.71□□□□□ -1.17
VCAN-203ENST00000343200 H0YHG0 523 aa7.71□□□□□ -1.17
VCAN-203ENST00000343200 ACBD3Q9H3P7 528 aa7.71□□□□□ -1.17
VCAN-203ENST00000343200 ARGLU1Q9NWB6 273 aaPredicted RBP7.71□□□□□ -1.17
VCAN-203ENST00000343200 SETD1BQ9UPS6 1966 aaKnown RBP7.71□□□□□ -1.18
VCAN-203ENST00000343200 TAF7LQ5H9L4 462 aa7.71□□□□□ -1.18
VCAN-203ENST00000343200 TSPYL1Q9H0U9 437 aa7.71□□□□□ -1.18
VCAN-203ENST00000343200 DEF6Q9H4E7 631 aa7.7□□□□□ -1.18
VCAN-203ENST00000343200 SKOR2Q2VWA4 1001 aaPredicted RBP7.7□□□□□ -1.18
VCAN-203ENST00000343200 TULP1O00294 542 aaPredicted RBP7.7□□□□□ -1.18
VCAN-203ENST00000343200 FAM43AQ8N2R8 423 aa7.7□□□□□ -1.18
VCAN-203ENST00000343200 HSP90B2PQ58FF3 399 aa7.7□□□□□ -1.18
VCAN-203ENST00000343200 NINQ8N4C6 2090 aa7.7□□□□□ -1.18
VCAN-203ENST00000343200 PES1O00541 588 aaKnown RBP7.69□□□□□ -1.18
VCAN-203ENST00000343200 CLSTN1O94985 981 aa7.69□□□□□ -1.18
VCAN-203ENST00000343200 USP8P40818 1118 aa7.69□□□□□ -1.18
VCAN-203ENST00000343200 EEA1Q15075 1411 aa7.68□□□□□ -1.18
VCAN-203ENST00000343200 B4GALNT3Q6L9W6 998 aa7.68□□□□□ -1.18
VCAN-203ENST00000343200 RUFY1Q96T51 708 aa7.68□□□□□ -1.18
VCAN-203ENST00000343200 TCERG1O14776 1098 aaKnown RBP7.68□□□□□ -1.18
VCAN-203ENST00000343200 CDR1P51861 262 aa7.68□□□□□ -1.18
VCAN-203ENST00000343200 SPRYD3Q8NCJ5 442 aa7.68□□□□□ -1.18
VCAN-203ENST00000343200 SLKQ9H2G2 1235 aaPredicted RBP7.67□□□□□ -1.18
VCAN-203ENST00000343200 HAP1P54257 671 aaPredicted RBP7.67□□□□□ -1.18
VCAN-203ENST00000343200 LEKR1Q6ZMV7 388 aa7.67□□□□□ -1.18
VCAN-203ENST00000343200 TSR1Q2NL82 804 aaKnown RBP7.66□□□□□ -1.18
VCAN-203ENST00000343200 NAP1L2Q9ULW6 460 aaPredicted RBP7.66□□□□□ -1.18
VCAN-203ENST00000343200 HSP90AB3PQ58FF7 597 aa7.65□□□□□ -1.18
VCAN-203ENST00000343200 CCAR2Q8N163 923 aaKnown RBP7.65□□□□□ -1.18
VCAN-203ENST00000343200 TPM1P09493 284 aa7.65□□□□□ -1.18
VCAN-203ENST00000343200 EIF4G2P78344 907 aaKnown RBP eCLIP7.65□□□□□ -1.18
VCAN-203ENST00000343200 CAGE1Q8TC20 777 aa7.65□□□□□ -1.19
VCAN-203ENST00000343200 KIAA1211Q6ZU35 1233 aa7.65□□□□□ -1.19
VCAN-203ENST00000343200 UBE2Q2Q8WVN8 375 aa7.64□□□□□ -1.19
VCAN-203ENST00000343200 GOLGA6L7A0A1B0GV03 622 aa7.64□□□□□ -1.19
VCAN-203ENST00000343200 NEXNQ0ZGT2 675 aa7.64□□□□□ -1.19
VCAN-203ENST00000343200 FANCIQ9NVI1 1328 aa7.64□□□□□ -1.19
VCAN-203ENST00000343200 ZRSR2Q15696 482 aaKnown RBP7.64□□□□□ -1.19
VCAN-203ENST00000343200 CITO14578 2027 aa7.64□□□□□ -1.19
VCAN-203ENST00000343200 DIAPH3Q9NSV4 1193 aa7.64□□□□□ -1.19
VCAN-203ENST00000343200 CCDC88CQ9P219 2028 aa7.64□□□□□ -1.19
VCAN-203ENST00000343200 GOLGA6L19H0YKK7 550 aa7.63□□□□□ -1.19
VCAN-203ENST00000343200 HMGN5P82970 282 aaKnown RBP7.63□□□□□ -1.19
VCAN-203ENST00000343200 ATP6V1DQ9Y5K8 247 aa7.63□□□□□ -1.19
VCAN-203ENST00000343200 CC2D1BQ5T0F9 858 aaKnown RBP7.63□□□□□ -1.19
VCAN-203ENST00000343200 CEP89Q96ST8 783 aa7.63□□□□□ -1.19
VCAN-203ENST00000343200 CFAP53Q96M91 514 aa7.62□□□□□ -1.19
VCAN-203ENST00000343200 PRM3Q9NNZ6 103 aa7.62□□□□□ -1.19
VCAN-203ENST00000343200 KIAA0754O94854 1291 aa7.62□□□□□ -1.19
VCAN-203ENST00000343200 MYH7P12883 1935 aa7.62□□□□□ -1.19
VCAN-203ENST00000343200 MYH8P13535 1937 aa7.62□□□□□ -1.19
VCAN-203ENST00000343200 TSHZ2Q9NRE2 1034 aa7.62□□□□□ -1.19
VCAN-203ENST00000343200 OS9Q13438 667 aaPredicted RBP7.61□□□□□ -1.19
VCAN-203ENST00000343200 ST18O60284 1047 aa7.61□□□□□ -1.19
VCAN-203ENST00000343200 KNSTRNQ9Y448 316 aa7.61□□□□□ -1.19
VCAN-203ENST00000343200 ZNF592Q92610 1267 aa7.6□□□□□ -1.19
VCAN-203ENST00000343200 NCBP3Q53F19 620 aaKnown RBP7.6□□□□□ -1.19
VCAN-203ENST00000343200 DDX11Q96FC9 970 aa7.6□□□□□ -1.19
VCAN-203ENST00000343200 KIF3AQ9Y496 699 aa7.6□□□□□ -1.19
VCAN-203ENST00000343200 IPO7O95373 1038 aaKnown RBP7.6□□□□□ -1.19
VCAN-203ENST00000343200 MYO6Q9UM54 1294 aa7.6□□□□□ -1.19
VCAN-203ENST00000343200 CDCA8Q53HL2 280 aa7.59□□□□□ -1.19
VCAN-203ENST00000343200 MNS1Q8NEH6 495 aa7.59□□□□□ -1.19
VCAN-203ENST00000343200 ERCC4Q92889 916 aaPredicted RBP7.59□□□□□ -1.19
VCAN-203ENST00000343200 GIMAP7Q8NHV1 300 aa7.59□□□□□ -1.19
VCAN-203ENST00000343200 CCDC39Q9UFE4 941 aa7.59□□□□□ -1.19
VCAN-203ENST00000343200 HOMER1Q86YM7 354 aa7.58□□□□□ -1.2
VCAN-203ENST00000343200 ANO8Q9HCE9 1232 aaPredicted RBP7.58□□□□□ -1.2
VCAN-203ENST00000343200 IRX3P78415 501 aaPredicted RBP7.57□□□□□ -1.2
VCAN-203ENST00000343200 TAOK2Q9UL54 1235 aa7.57□□□□□ -1.2
VCAN-203ENST00000343200 GOLGA2Q08379 1002 aa7.57□□□□□ -1.2
VCAN-203ENST00000343200 SSR1P43307 286 aaKnown RBP7.57□□□□□ -1.2
VCAN-203ENST00000343200 NASPP49321 788 aaPredicted RBP7.57□□□□□ -1.2
VCAN-203ENST00000343200 PLCD4Q9BRC7 762 aa7.57□□□□□ -1.2
VCAN-203ENST00000343200 MYH15Q9Y2K3 1946 aa7.57□□□□□ -1.2
VCAN-203ENST00000343200 FRAT1Q92837 279 aaPredicted RBP7.57□□□□□ -1.2
VCAN-203ENST00000343200 GPATCH3Q96I76 525 aa7.57□□□□□ -1.2
VCAN-203ENST00000343200 EVPLQ92817 2033 aa7.57□□□□□ -1.2
VCAN-203ENST00000343200 C14orf37Q86TY3 774 aa7.57□□□□□ -1.2
VCAN-203ENST00000343200 CCP110O43303 1012 aa7.56□□□□□ -1.2
VCAN-203ENST00000343200 MAPK8IP3Q9UPT6 1336 aa7.56□□□□□ -1.2
VCAN-203ENST00000343200 GOLGA6L10A6NI86 522 aa7.56□□□□□ -1.2
VCAN-203ENST00000343200 CCER2I3L3R5 266 aa7.56□□□□□ -1.2
VCAN-203ENST00000343200 IFT57Q9NWB7 429 aa7.55□□□□□ -1.2
VCAN-203ENST00000343200 BECN2A8MW95 431 aa7.55□□□□□ -1.2
VCAN-203ENST00000343200 ZNF526Q8TF50 670 aaPredicted RBP7.55□□□□□ -1.2
VCAN-203ENST00000343200 MYH3P11055 1940 aa7.55□□□□□ -1.2
VCAN-203ENST00000343200 CLASRPQ8N2M8 674 aaKnown RBP7.54□□□□□ -1.2
VCAN-203ENST00000343200 ANKRD20A12PQ8NF67 263 aa7.54□□□□□ -1.2
VCAN-203ENST00000343200 HOOK1Q9UJC3 728 aaKnown RBP7.54□□□□□ -1.2
VCAN-203ENST00000343200 HOMEZQ8IX15 550 aa7.54□□□□□ -1.2
VCAN-203ENST00000343200 TPD52L1Q16890 204 aaPredicted RBP7.54□□□□□ -1.2
VCAN-203ENST00000343200 DDX49Q9Y6V7 483 aaKnown RBP7.54□□□□□ -1.2
VCAN-203ENST00000343200 FAM107BQ9H098 131 aa7.54□□□□□ -1.2
VCAN-203ENST00000343200 AXDND1Q5T1B0 1012 aaPredicted RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms