RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 HSP90B1P14625 803 aaKnown RBP13.12□□□□□ -0.31
CLIP1-201ENST00000302528 SYAP1Q96A49 352 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-201ENST00000302528 TMX4Q9H1E5 349 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-201ENST00000302528 RASSF8Q8NHQ8 419 aa13.11□□□□□ -0.31
CLIP1-201ENST00000302528 B4GALNT3Q6L9W6 998 aa13.1□□□□□ -0.31
CLIP1-201ENST00000302528 EEA1Q15075 1411 aa13.1□□□□□ -0.31
CLIP1-201ENST00000302528 CREBRFQ8IUR6 639 aa13.1□□□□□ -0.31
CLIP1-201ENST00000302528 PLEKHD1A6NEE1 506 aa13.09□□□□□ -0.31
CLIP1-201ENST00000302528 SETQ01105 290 aaPredicted RBP13.09□□□□□ -0.31
CLIP1-201ENST00000302528 RTF1Q92541 710 aaKnown RBP13.09□□□□□ -0.31
CLIP1-201ENST00000302528 GZF1Q9H116 711 aaPredicted RBP13.09□□□□□ -0.31
CLIP1-201ENST00000302528 TPM3P06753 285 aa13.09□□□□□ -0.31
CLIP1-201ENST00000302528 TNIKQ9UKE5 1360 aa13.08□□□□□ -0.32
CLIP1-201ENST00000302528 ZNF330Q9Y3S2 320 aaPredicted RBP13.08□□□□□ -0.32
CLIP1-201ENST00000302528 CALRP27797 417 aaKnown RBP13.07□□□□□ -0.32
CLIP1-201ENST00000302528 CLIP1P30622 1438 aa13.07□□□□□ -0.32
CLIP1-201ENST00000302528 GOLGA3Q08378 1498 aa13.06□□□□□ -0.32
CLIP1-201ENST00000302528 KRI1Q8N9T8 703 aaKnown RBP13.06□□□□□ -0.32
CLIP1-201ENST00000302528 FBXO3Q9UK99 471 aa13.06□□□□□ -0.32
CLIP1-201ENST00000302528 ANO8Q9HCE9 1232 aaPredicted RBP13.06□□□□□ -0.32
CLIP1-201ENST00000302528 GORABQ5T7V8 394 aa13.05□□□□□ -0.32
CLIP1-201ENST00000302528 CECR2Q9BXF3 1484 aa13.03□□□□□ -0.32
CLIP1-201ENST00000302528 NACADO15069 1562 aa13.03□□□□□ -0.32
CLIP1-201ENST00000302528 PATL2C9JE40 543 aaKnown RBP13.03□□□□□ -0.32
CLIP1-201ENST00000302528 IPO8O15397 1037 aaKnown RBP13.02□□□□□ -0.32
CLIP1-201ENST00000302528 VPS53Q5VIR6 699 aa13.02□□□□□ -0.32
CLIP1-201ENST00000302528 MARCH6O60337 910 aa13.02□□□□□ -0.33
CLIP1-201ENST00000302528 SLKQ9H2G2 1235 aaPredicted RBP13.02□□□□□ -0.33
CLIP1-201ENST00000302528 WWC1Q8IX03 1113 aa13.01□□□□□ -0.33
CLIP1-201ENST00000302528 G3V3G9 751 aa13.01□□□□□ -0.33
CLIP1-201ENST00000302528 CSPP1Q1MSJ5 1256 aa13.01□□□□□ -0.33
CLIP1-201ENST00000302528 DCAF8Q5TAQ9 597 aa13.01□□□□□ -0.33
CLIP1-201ENST00000302528 SRPK2P78362 688 aaKnown RBP13.01□□□□□ -0.33
CLIP1-201ENST00000302528 MORC1Q86VD1 984 aa13□□□□□ -0.33
CLIP1-201ENST00000302528 ZBTB4Q9P1Z0 1013 aaPredicted RBP13□□□□□ -0.33
CLIP1-201ENST00000302528 CFDP1Q9UEE9 299 aaPredicted RBP13□□□□□ -0.33
CLIP1-201ENST00000302528 GOLGA6L3A6NEY3 463 aa13□□□□□ -0.33
CLIP1-201ENST00000302528 TMF1P82094 1093 aa13□□□□□ -0.33
CLIP1-201ENST00000302528 TAF7LQ5H9L4 462 aa13□□□□□ -0.33
CLIP1-201ENST00000302528 PES1O00541 588 aaKnown RBP12.99□□□□□ -0.33
CLIP1-201ENST00000302528 CHMP3Q9Y3E7 222 aa12.99□□□□□ -0.33
CLIP1-201ENST00000302528 GPATCH3Q96I76 525 aa12.98□□□□□ -0.33
CLIP1-201ENST00000302528 CSB-PGBD3P0DP91 1061 aa12.98□□□□□ -0.33
CLIP1-201ENST00000302528 CALD1Q05682 793 aaKnown RBP12.98□□□□□ -0.33
CLIP1-201ENST00000302528 HDGFP51858 240 aaKnown RBP12.97□□□□□ -0.33
CLIP1-201ENST00000302528 ITPRIPQ8IWB1 547 aa12.97□□□□□ -0.33
CLIP1-201ENST00000302528 TOMM22Q9NS69 142 aa12.97□□□□□ -0.33
CLIP1-201ENST00000302528 TSR1Q2NL82 804 aaKnown RBP12.96□□□□□ -0.33
CLIP1-201ENST00000302528 RWDD1Q9H446 243 aaPredicted RBP12.96□□□□□ -0.33
CLIP1-201ENST00000302528 TRIM6-TRIM34B2RNG4 842 aa12.96□□□□□ -0.34
CLIP1-201ENST00000302528 TPD52L1Q16890 204 aaPredicted RBP12.96□□□□□ -0.34
CLIP1-201ENST00000302528 WRNQ14191 1432 aaPredicted RBP eCLIP12.96□□□□□ -0.34
CLIP1-201ENST00000302528 CCAR2Q8N163 923 aaKnown RBP12.96□□□□□ -0.34
CLIP1-201ENST00000302528 SF3A1Q15459 793 aaKnown RBP12.95□□□□□ -0.34
CLIP1-201ENST00000302528 BAZ1AQ9NRL2 1556 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-201ENST00000302528 NOL8Q76FK4 1167 aaKnown RBP12.94□□□□□ -0.34
CLIP1-201ENST00000302528 MROH2BQ7Z745 1585 aa12.94□□□□□ -0.34
CLIP1-201ENST00000302528 SAFB2Q14151 953 aaKnown RBP eCLIP12.94□□□□□ -0.34
CLIP1-201ENST00000302528 MFAP1P55081 439 aaKnown RBP12.94□□□□□ -0.34
CLIP1-201ENST00000302528 RRP12Q5JTH9 1297 aaKnown RBP12.94□□□□□ -0.34
CLIP1-201ENST00000302528 CCDC70Q6NSX1 233 aa12.94□□□□□ -0.34
CLIP1-201ENST00000302528 CEP164Q9UPV0 1460 aa12.93□□□□□ -0.34
CLIP1-201ENST00000302528 PHF14O94880 888 aa12.93□□□□□ -0.34
CLIP1-201ENST00000302528 GPS2Q13227 327 aa12.93□□□□□ -0.34
CLIP1-201ENST00000302528 PAK3O75914 559 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-201ENST00000302528 FRAT2O75474 233 aaPredicted RBP12.92□□□□□ -0.34
CLIP1-201ENST00000302528 STK31Q9BXU1 1019 aa12.92□□□□□ -0.34
CLIP1-201ENST00000302528 CHMP4AQ9BY43 222 aa12.92□□□□□ -0.34
CLIP1-201ENST00000302528 KIF3AQ9Y496 699 aa12.92□□□□□ -0.34
CLIP1-201ENST00000302528 CCDC9Q9Y3X0 531 aaKnown RBP12.92□□□□□ -0.34
CLIP1-201ENST00000302528 SOGA1O94964 1423 aa12.92□□□□□ -0.34
CLIP1-201ENST00000302528 TCERG1O14776 1098 aaKnown RBP12.91□□□□□ -0.34
CLIP1-201ENST00000302528 TPM2P07951 284 aa12.91□□□□□ -0.34
CLIP1-201ENST00000302528 HDAC5Q9UQL6 1122 aa12.91□□□□□ -0.34
CLIP1-201ENST00000302528 HDGFL2Q7Z4V5 671 aaPredicted RBP12.91□□□□□ -0.34
CLIP1-201ENST00000302528 KIF16BQ96L93 1317 aa12.91□□□□□ -0.34
CLIP1-201ENST00000302528 CNKSR2Q8WXI2 1034 aa12.9□□□□□ -0.34
CLIP1-201ENST00000302528 FOXD4L1Q9NU39 408 aa12.9□□□□□ -0.34
CLIP1-201ENST00000302528 TPM1P09493 284 aa12.9□□□□□ -0.34
CLIP1-201ENST00000302528 HMMRO75330 724 aa12.89□□□□□ -0.35
CLIP1-201ENST00000302528 MLECQ14165 292 aa12.89□□□□□ -0.35
CLIP1-201ENST00000302528 DCAF11Q8TEB1 546 aa12.89□□□□□ -0.35
CLIP1-201ENST00000302528 RBM19Q9Y4C8 960 aaKnown RBP12.89□□□□□ -0.35
CLIP1-201ENST00000302528 HSP90AA2PQ14568 343 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-201ENST00000302528 SPAG9O60271 1321 aaKnown RBP12.88□□□□□ -0.35
CLIP1-201ENST00000302528 U2AF1L5P0DN76 240 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-201ENST00000302528 U2AF1Q01081 240 aaKnown RBP eCLIP12.88□□□□□ -0.35
CLIP1-201ENST00000302528 TCEAL9Q9UHQ7 104 aa12.87□□□□□ -0.35
CLIP1-201ENST00000302528 GTF2E1P29083 439 aaPredicted RBP12.87□□□□□ -0.35
CLIP1-201ENST00000302528 PMFBP1Q8TBY8 1022 aa12.87□□□□□ -0.35
CLIP1-201ENST00000302528 GOLGA6L19H0YKK7 550 aa12.87□□□□□ -0.35
CLIP1-201ENST00000302528 KANK1Q14678 1352 aa12.86□□□□□ -0.35
CLIP1-201ENST00000302528 H3BQV1 296 aa12.86□□□□□ -0.35
CLIP1-201ENST00000302528 IFFO2Q5TF58 517 aa12.86□□□□□ -0.35
CLIP1-201ENST00000302528 FOXD4L5Q5VV16 416 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-201ENST00000302528 FOXD4L4Q8WXT5 416 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-201ENST00000302528 ZNF771Q7L3S4 317 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-201ENST00000302528 STK26Q9P289 416 aa12.86□□□□□ -0.35
CLIP1-201ENST00000302528 BECN2A8MW95 431 aa12.85□□□□□ -0.35
CLIP1-201ENST00000302528 ST18O60284 1047 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms