RNA–Protein interactions for RNA: ENST00000273286.5

LRTM1-201, Transcript of leucine rich repeats and transmembrane domains 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRTM1, Length 1,423 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1-201ENST00000273286 STK25O00506 426 aa18.57■□□□□ 0.56
LRTM1-201ENST00000273286 G3V3G9 751 aa18.56■□□□□ 0.56
LRTM1-201ENST00000273286 SOX12O15370 315 aa18.56■□□□□ 0.56
LRTM1-201ENST00000273286 BOLA1Q9Y3E2 137 aa18.54■□□□□ 0.56
LRTM1-201ENST00000273286 LAMC3Q9Y6N6 1575 aa18.54■□□□□ 0.56
LRTM1-201ENST00000273286 NESP48681 1621 aa18.53■□□□□ 0.56
LRTM1-201ENST00000273286 MROH2BQ7Z745 1585 aa18.52■□□□□ 0.56
LRTM1-201ENST00000273286 PHF8Q9UPP1 1060 aa18.51■□□□□ 0.55
LRTM1-201ENST00000273286 LCE2DQ5TA82 110 aaPredicted RBP18.5■□□□□ 0.55
LRTM1-201ENST00000273286 POTEMA6NI47 508 aa18.48■□□□□ 0.55
LRTM1-201ENST00000273286 MS4A4AQ96JQ5 239 aa18.46■□□□□ 0.55
LRTM1-201ENST00000273286 POTEGQ6S5H5 508 aa18.45■□□□□ 0.54
LRTM1-201ENST00000273286 PDS5BQ9NTI5 1447 aa18.44■□□□□ 0.54
LRTM1-201ENST00000273286 THOC2Q8NI27 1593 aaKnown RBP18.41■□□□□ 0.54
LRTM1-201ENST00000273286 NLRP6P59044 892 aa18.4■□□□□ 0.54
LRTM1-201ENST00000273286 TMEM121BQ9BXQ6 578 aaPredicted RBP18.39■□□□□ 0.53
LRTM1-201ENST00000273286 SNPHO15079 494 aa18.37■□□□□ 0.53
LRTM1-201ENST00000273286 MICALL2Q8IY33 904 aa18.37■□□□□ 0.53
LRTM1-201ENST00000273286 FBXO22Q8NEZ5 403 aa18.37■□□□□ 0.53
LRTM1-201ENST00000273286 MFRPQ9BY79 579 aa18.37■□□□□ 0.53
LRTM1-201ENST00000273286 CADPSQ9ULU8 1353 aa18.34■□□□□ 0.53
LRTM1-201ENST00000273286 ST18O60284 1047 aa18.34■□□□□ 0.53
LRTM1-201ENST00000273286 KIF21AQ7Z4S6 1674 aa18.32■□□□□ 0.52
LRTM1-201ENST00000273286 WIZO95785 1651 aa18.28■□□□□ 0.52
LRTM1-201ENST00000273286 HS6ST3Q8IZP7 471 aa18.27■□□□□ 0.52
LRTM1-201ENST00000273286 MRC2Q9UBG0 1479 aa18.24■□□□□ 0.51
LRTM1-201ENST00000273286 CHGAP10645 457 aaKnown RBP18.23■□□□□ 0.51
LRTM1-201ENST00000273286 TMEM92Q6UXU6 159 aa18.2■□□□□ 0.5
LRTM1-201ENST00000273286 WDR62O43379 1518 aa18.19■□□□□ 0.5
LRTM1-201ENST00000273286 CEP164Q9UPV0 1460 aa18.17■□□□□ 0.5
LRTM1-201ENST00000273286 RSF1Q96T23 1441 aaPredicted RBP18.16■□□□□ 0.5
LRTM1-201ENST00000273286 CFTRP13569 1480 aa18.14■□□□□ 0.49
LRTM1-201ENST00000273286 TOP2AP11388 1531 aaKnown RBP18.13■□□□□ 0.49
LRTM1-201ENST00000273286 FANCD2Q9BXW9 1451 aa18.12■□□□□ 0.49
LRTM1-201ENST00000273286 HOXB3P14651 431 aaPredicted RBP18.12■□□□□ 0.49
LRTM1-201ENST00000273286 MARVELD3Q96A59 401 aa18.12■□□□□ 0.49
LRTM1-201ENST00000273286 PCDH10Q9P2E7 1040 aa18.1■□□□□ 0.49
LRTM1-201ENST00000273286 PPP1R37O75864 691 aa18.07■□□□□ 0.48
LRTM1-201ENST00000273286 DOK7Q18PE1 504 aa18.07■□□□□ 0.48
LRTM1-201ENST00000273286 ZNF710Q8N1W2 664 aa18.05■□□□□ 0.48
LRTM1-201ENST00000273286 EMP3P54852 163 aa18.03■□□□□ 0.48
LRTM1-201ENST00000273286 PLSCR2Q9NRY7 297 aa18.03■□□□□ 0.48
LRTM1-201ENST00000273286 NKX1-1Q15270 411 aaPredicted RBP18.01■□□□□ 0.47
LRTM1-201ENST00000273286 CDAN1Q8IWY9 1227 aa18.01■□□□□ 0.47
LRTM1-201ENST00000273286 RIMBP2O15034 1052 aa17.98■□□□□ 0.47
LRTM1-201ENST00000273286 C2orf72A6NCS6 295 aa17.96■□□□□ 0.47
LRTM1-201ENST00000273286 PRDM2Q13029 1718 aa17.95■□□□□ 0.46
LRTM1-201ENST00000273286 URB2Q14146 1524 aaKnown RBP17.93■□□□□ 0.46
LRTM1-201ENST00000273286 KIF3CO14782 793 aa17.93■□□□□ 0.46
LRTM1-201ENST00000273286 HOXB1P14653 301 aaPredicted RBP17.93■□□□□ 0.46
LRTM1-201ENST00000273286 TMC2Q8TDI7 906 aa17.91■□□□□ 0.46
LRTM1-201ENST00000273286 FAM205CA6NFA0 338 aa17.9■□□□□ 0.46
LRTM1-201ENST00000273286 RYDENQ9NUL5 291 aaKnown RBP17.89■□□□□ 0.46
LRTM1-201ENST00000273286 ZSWIM6Q9HCJ5 1215 aa17.88■□□□□ 0.45
LRTM1-201ENST00000273286 CCDC88BA6NC98 1476 aa17.87■□□□□ 0.45
LRTM1-201ENST00000273286 HS3ST6Q96QI5 342 aa17.87■□□□□ 0.45
LRTM1-201ENST00000273286 POTEB3A0JP26 581 aa17.83■□□□□ 0.45
LRTM1-201ENST00000273286 POTEBQ6S5H4 581 aa17.83■□□□□ 0.45
LRTM1-201ENST00000273286 ABCC8Q09428 1581 aa17.83■□□□□ 0.44
LRTM1-201ENST00000273286 AMER1Q5JTC6 1135 aaPredicted RBP17.82■□□□□ 0.44
LRTM1-201ENST00000273286 IFT140Q96RY7 1462 aa17.82■□□□□ 0.44
LRTM1-201ENST00000273286 GPR153Q6NV75 609 aa17.81■□□□□ 0.44
LRTM1-201ENST00000273286 ERBB3P21860 1342 aa17.8■□□□□ 0.44
LRTM1-201ENST00000273286 ARSIQ5FYB1 569 aa17.78■□□□□ 0.44
LRTM1-201ENST00000273286 GTPBP6O43824 516 aaPredicted RBP17.76■□□□□ 0.43
LRTM1-201ENST00000273286 TOPBP1Q92547 1522 aa17.76■□□□□ 0.43
LRTM1-201ENST00000273286 RTN4Q9NQC3 1192 aaKnown RBP17.74■□□□□ 0.43
LRTM1-201ENST00000273286 KHSRPQ92945 711 aaKnown RBP eCLIP17.72■□□□□ 0.43
LRTM1-201ENST00000273286 DNMBPQ6XZF7 1577 aa17.72■□□□□ 0.43
LRTM1-201ENST00000273286 GPHNQ9NQX3 736 aaPredicted RBP17.72■□□□□ 0.43
LRTM1-201ENST00000273286 VARS2Q5ST30 1063 aaKnown RBP17.71■□□□□ 0.43
LRTM1-201ENST00000273286 ZNF608Q9ULD9 1512 aaPredicted RBP17.69■□□□□ 0.42
LRTM1-201ENST00000273286 SLC34A2O95436 690 aa17.68■□□□□ 0.42
LRTM1-201ENST00000273286 FOXK1P85037 733 aa17.68■□□□□ 0.42
LRTM1-201ENST00000273286 DSG2Q14126 1118 aa17.65■□□□□ 0.42
LRTM1-201ENST00000273286 PLPP6Q8IY26 295 aa17.65■□□□□ 0.42
LRTM1-201ENST00000273286 KRTAP3-3Q9BYR6 98 aa17.65■□□□□ 0.42
LRTM1-201ENST00000273286 KRTAP3-2Q9BYR7 98 aa17.65■□□□□ 0.42
LRTM1-201ENST00000273286 PCDHGA4Q9Y5G9 962 aa17.65■□□□□ 0.42
LRTM1-201ENST00000273286 EIF4G3O43432 1585 aaKnown RBP17.64■□□□□ 0.42
LRTM1-201ENST00000273286 NUDT7P0C024 238 aa17.63■□□□□ 0.41
LRTM1-201ENST00000273286 CRISPLD2Q9H0B8 497 aa17.61■□□□□ 0.41
LRTM1-201ENST00000273286 TARBP1Q13395 1621 aaKnown RBP17.6■□□□□ 0.41
LRTM1-201ENST00000273286 ZNF316A6NFI3 1004 aaPredicted RBP17.6■□□□□ 0.41
LRTM1-201ENST00000273286 POLA1P09884 1462 aaPredicted RBP17.58■□□□□ 0.4
LRTM1-201ENST00000273286 RIMBP3CA6NJZ7 1639 aa17.58■□□□□ 0.4
LRTM1-201ENST00000273286 RIMBP3BA6NNM3 1639 aa17.58■□□□□ 0.4
LRTM1-201ENST00000273286 RIMBP3Q9UFD9 1639 aa17.58■□□□□ 0.4
LRTM1-201ENST00000273286 ARHGEF11O15085 1522 aa17.56■□□□□ 0.4
LRTM1-201ENST00000273286 NCKAP5LQ9HCH0 1330 aa17.56■□□□□ 0.4
LRTM1-201ENST00000273286 SPNS2Q8IVW8 549 aa17.55■□□□□ 0.4
LRTM1-201ENST00000273286 PTCD2Q8WV60 388 aaKnown RBP17.55■□□□□ 0.4
LRTM1-201ENST00000273286 BBXQ8WY36 941 aaPredicted RBP17.55■□□□□ 0.4
LRTM1-201ENST00000273286 WDR97A6NE52 1622 aa17.54■□□□□ 0.4
LRTM1-201ENST00000273286 AQRO60306 1485 aaKnown RBP eCLIP17.54■□□□□ 0.4
LRTM1-201ENST00000273286 ZNF687Q8N1G0 1237 aa17.54■□□□□ 0.4
LRTM1-201ENST00000273286 PDE4AP27815 886 aa17.52■□□□□ 0.4
LRTM1-201ENST00000273286 PPP1R15BQ5SWA1 713 aa17.52■□□□□ 0.4
LRTM1-201ENST00000273286 LHX6Q9UPM6 363 aa17.51■□□□□ 0.39
LRTM1-201ENST00000273286 SOGA1O94964 1423 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms